Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq126 259 5e-64 seq290 152 5e-32 seq188 129 6e-25 seq204 122 9e-23 seq135 120 3e-22 >seq126 Length=136461 Score = 259 bits (286), Expect = 5e-64 Identities = 425/604 (70%), Gaps = 8/604 (1%) Strand=Plus/Minus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| || ||||| |||| ||||||||| | ||||| ||||| ||| ||| Sbjct 10883 GCAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAG 10824 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||||||||||||||||| || || |||||||| |||| | |||| |||||| ||||| Sbjct 10823 ACCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAA 10764 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG- 133072 || ||| || || || |||||||||| ||||||||| | | | || | | || || Sbjct 10763 GATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACAC-GCGGGT 10705 Query 133073 CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGT 133132 || ||| || ||||| | ||||| | |||| || || || || || ||||| Sbjct 10704 CGCACCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCAC 10645 Query 133133 TCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACA 133192 || | | || ||||| || | | ||| ||||| ||||| || || | Sbjct 10644 GCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTAGA 10585 Query 133193 TTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCA 133252 |||||||| | |||||| |||||||| || ||||| || ||||| || |||||| || Sbjct 10584 CCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGGCA 10525 Query 133253 CCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGG 133312 |||||||||| | ||| | | ||| || ||||| ||||| ||||| ||||| | Sbjct 10524 CCTGCACTTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTGGCTG 10465 Query 133313 CGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC--GCTCCCA 133370 |||| ||||| ||||||||||||||||| || ||||||||||| | ||| ||| ||| Sbjct 10464 CGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGT-GAGCTTGCT-CCA 10407 Query 133371 GTCGCGCGTGTCCTTGGAC-AGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTT 133429 ||| | | | | || || ||||| | |||||| | ||||| || || |||||||||| Sbjct 10406 GTC-CTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCTT 10348 Query 133430 TTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGT 133489 | |||||||| ||||| || | || ||||| || | ||| || ||| ||||| Sbjct 10347 TCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAACAGCACGAAACGGTTGGGGT 10288 Query 133490 TTTC 133493 | || Sbjct 10287 TCTC 10284 >seq290 Length=60535 Score = 152 bits (168), Expect = 5e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || || |||||||| |||||||| ||||||| ||| | Sbjct 10465 AAAATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCG 10524 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 | |||||| | | | | || | ||||| | ||||| |||||||| |||||| || Sbjct 10525 TCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAAT-CCCGCCTGA 10583 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| ||||| || |||| ||||| || ||||| Sbjct 10584 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGACTA 10643 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| |||| ||||| ||||||||||| || | || || Sbjct 10644 CAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGTGGTGG 10694 >seq188 Length=115905 Score = 129 bits (142), Expect = 6e-25 Identities = 171/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || | || ||||| || ||||| | ||||| ||| | Sbjct 15609 AAGATGCAGATTTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCT 15550 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-G 38358 | ||| | | |||| | || |||| |||| ||||| || || || |||||| | Sbjct 15549 TCGGACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAGGAAGGCAT-CCCGCCTG 15492 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| | || | ||| ||||| |||||||| |||| ||||| || | ||||| Sbjct 15491 ACCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACT 15432 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||| ||||| | ||||| || ||||||||||| || ||||||| Sbjct 15431 ACAACATCCAGAAGGAGTCTACGCTCCACCTGGTGCTGCGTCTGCGAGGCGG 15380 Score = 120 bits (132), Expect = 3e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| || ||||| | ||||| ||| | | Sbjct 15150 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 15091 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || |||| |||| ||||| || || || |||||| |||| Sbjct 15090 GACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAGGAAGGCAT-CCCGCCTGACC 15033 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | ||| ||||| |||||||| |||| ||||| || | ||||||| Sbjct 15032 AGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGTGACTACA 14973 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | || || || ||||||||||| || ||||||| Sbjct 14972 ACATCCAGAAGGAGTCTACACTCCACCTGGTGCTGCGTCTGCGAGGCGG 14924 Score = 120 bits (132), Expect = 3e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| || ||||| | ||||| ||| | | Sbjct 15378 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 15319 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || |||| |||| ||||| || || || |||||| |||| Sbjct 15318 GACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAGGAAGGCAT-CCCGCCTGACC 15261 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | ||| ||||| |||||||| |||| ||||| || | |||||||| Sbjct 15260 AGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACA 15201 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | || || || ||||||||||| | ||||||| Sbjct 15200 ACATCCAGAAGGAGTCTACACTCCACCTGGTGCTGCGTCTTCGAGGCGG 15152 Score = 114 bits (126), Expect = 1e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| || ||||| | ||||| ||| | | Sbjct 14922 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 14863 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || |||| |||| ||||| || || || |||||| |||| Sbjct 14862 GACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAGGAAGGCAT-CCCGCCTGACC 14805 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | ||| ||||| |||||||| |||| ||||| || | ||||||| Sbjct 14804 AGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGTGACTACA 14745 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | || || || ||||||||||| || | ||||| Sbjct 14744 ACATCCAGAAGGAGTCTACACTCCACCTGGTGCTGCGTCTGCGTGGCGG 14696 >seq204 Length=54989 Score = 122 bits (134), Expect = 9e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | |||||||| |||||||| ||||||| ||| | | Sbjct 44213 ATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 44272 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||||| | | | | || | ||||||| ||||| |||||||| |||||| ||||| Sbjct 44273 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAAT-CCCGCCTGACCA 44331 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| ||||| ||| |||||||| Sbjct 44332 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAA 44391 Query 38423 CATCCAAAAGG 38433 |||||| |||| Sbjct 44392 CATCCAGAAGG 44402 >seq135 Length=100430 Score = 120 bits (132), Expect = 3e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || ||| | || ||||| ||||| ||| ||||||| ||| | Sbjct 43050 AAGATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGAGCCG 42991 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||| | | |||| | || | || || | ||||| || || ||||| | || Sbjct 42990 TCGGACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGA 42932 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| ||||| || |||| |||||||| | ||| || Sbjct 42931 CCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGATTA 42872 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| ||||| | || || || ||||||||||| Sbjct 42871 CAACATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCGT 42832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500139557265280