Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq510 242 5e-59 seq126 111 2e-19 seq101 100 4e-16 seq34 100 4e-16 seq601 96.9 4e-15 >seq510 Length=41021 Score = 242 bits (268), Expect = 5e-59 Identities = 1079/1676 (64%), Gaps = 46/1676 (3%) Strand=Plus/Plus Query 111673 TGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 ||||||| ||||| ||||| | | || | |||| ||||| || || || |||||| Sbjct 19977 TGGAGACGTACGAGCTCATGTCGCAGAAGT-TCTTCACGCACGCCACCCCTACTCTCTTC 20035 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| || || ||| | || || |||| ||| ||||| | || | |||| || Sbjct 20036 AACGCCGGCACGCCACGTCCTCAGTTGTCTTCTTGCTTCCTATTGGCTATGCAGGATGAC 20095 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || || | |||||||||| ||| || | |||| ||| ||||| || ||||| || Sbjct 20096 TCTATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGGC 20155 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 |||||||| || || || | || | |||| || || | || || || Sbjct 20156 GGTATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGCTACATCCGCGGCACGAAC 20215 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 || || | || ||||| ||| || | || || ||||||| ||| || |||||||| Sbjct 20216 GGCTCCTCTAACGGCATTATCCCA-TGTTGCGTGTGTTTAACGACACGGCTCGCTATGTG 20274 Query 111972 AACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 112028 |||| | || || |||||||| || |||| |||| | ||||| |||||||| Sbjct 20275 GACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGCC 20334 Query 112029 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGC 112088 || | | |||||||| || ||||| ||||| ||| ||||| | | | | ||||| Sbjct 20335 GACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGAGCTG-CACCGCGCCGC 20393 Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 112148 || | || | ||| || ||| | || |||||||||||||||||||| |||| | |||| Sbjct 20394 GACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAGGCCAATGGC 20453 Query 112149 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGGA 112207 || ||| | | || ||||| || | || || ||||| | ||| ||| |||| || || Sbjct 20454 AAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCTGGTCTGTACGAGTGC--TGGGCGATGA 20511 Query 112208 GTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGC 112267 ||||||||| || || |||||||||| | ||| | || ||| | ||| | || Sbjct 20512 GTTTGAAGCTCTGTATGAAAAGTACGAGAAGGAAGGACGTGCGCGTAAGACAATCAACGC 20571 Query 112268 TGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCT 112327 | | ||||| ||||| || | |||| | ||||| || || | ||||| Sbjct 20572 TCAGCAGCTGTGGTTCGCTATCCTAGACGCTCAGATTGAGACGGGAGTGCCCTTCATGCT 20631 Query 112328 TTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTC 112387 ||||| ||||| ||||| ||| || || |||| || ||| |||| |||| Sbjct 20632 CTACAAGGACGCAGCTAACCGCAAGTCGAACCAGCAGAACTT-GGTACGATC---CGTTC 20687 Query 112388 ---CAACCTCTGTACAGAAATCTTGGAATTTACAGACA-AAGATGAGACGGCTGTGTGTA 112443 |||| | || ||| || |||| | || | || |||||| ||| ||||| | Sbjct 20688 CAGCAACTTATGCTGCGAAGTCATGGAGTACAC-GTCACCCGATGAGGTGGCAGTGTGCA 20746 Query 112444 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATG 112503 || | || || | || || || | || |||||| | || | || || || Sbjct 20747 ACTTGGCGTCTGTGGCGCTGCCTATGTTTGTGGA-----AAACGGTG-TGTTCGACTACA 20800 Query 112504 AAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAA 112563 | | ||| | || || || |||| ||||| |||| || || || | Sbjct 20801 AGAGACTGTATGAGGTGGTCAAGGTGATCACGCGCAACCTCAACAAGGTCATCGACGTCA 20860 Query 112564 ATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTC 112622 | | ||| || |||| ||| ||||| || || || ||| | || ||||| |||||| | Sbjct 20861 ACTATTATCCTGTTGCAGA-GGCTCGCAAGTCCAACATGCGCCATCGTCCCATTGGTATT 20919 Query 112623 GGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAA 112682 || ||||| ||||| ||||||| ||||| || | |||| || || | || Sbjct 20920 GGCGTCCAGGGTCTGGCGGATGCGTTCATCCTCATGAACTACGCGTTCGAGAGCCCGCAA 20979 Query 112683 GCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGT 112742 || ||| | || | || || ||||| || || || || | ||| || Sbjct 20980 GCTCGTGAATTGAACAAGAACATCTTCGAGACGATCTACTTTGCTGCCATGGAGACGTCG 21039 Query 112743 TCGGAG-TTGGCA-GAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA- 112799 |||| ||| || | ||| ||||| || || || || |||| ||||| || || Sbjct 21040 ATGGAGATTGCCACGGAATTG--GGTCCTTACGAGACGTTCCAGGGCTCTCCGGC--CAG 21095 Query 112800 CAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGAGACC--AAGCTTCACTACG--ACT 112854 ||||| ||| || || || ||||||| || | ||| | || || | ||| Sbjct 21096 TAAGGGTATCTTCCAGTTCGACATGTGGG-GCGTCACACCTTCATCTGGGCTTTGGAACT 21154 Query 112855 GGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 112914 ||| ||| || || || | ||| | | ||||| |||||| || || | |||| Sbjct 21155 GGGCCGCACTAAAAGATGACGTCATTAAACACGGTCTCCGTAACTCGCTGCTGGTTGCAC 21214 Query 112915 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 112974 | ||||| ||||||||||| || || ||| |||| || || || | | || || |||| Sbjct 21215 CCATGCCGACAGCCTCCACGGCTCAGATCCTGGGCAACAACGAGTCTATCGAGCCTTACA 21274 Query 112975 CGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATC 113034 || | ||||| || | | | || || ||||| ||| || |||||| ||| Sbjct 21275 CGTCCAACATGTACAACCGTCGTGTGTTGGCTGGTGAGTTCACGATCGTTAACAAGTATC 21334 Query 113035 TCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGA--TATGAAGGATCTCATGGT 113092 | || | || || | ||| | || | ||| | ||| || | | ||| || | Sbjct 21335 TGATGAAGGAGCTTATCGAGCTCGGCATTTGGACGCCGGAAGTACGTA--ATCAGATTCT 21392 Query 113093 GAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTA 113152 ||| | ||||| || | || || | ||| ||||| ||||| ||||| || ||| Sbjct 21393 GAATGATGGTGGCTCGGTGCAGAAGGTCAAGGACATTCCGGATGATGTTAAGGAGAAGTA 21452 Query 113153 CCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCG 113212 | || || ||||| |||||| ||||| ||| | ||| || | || || ||||| || Sbjct 21453 CAAGACGGTGTGGGAGATCAAGCAGAAGGCTGTTCTGGACCTGTCGGCTGACCGTGG-CG 21511 Query 113213 CTT-CATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGC 113271 ||| || || ||||| |||| | ||| | || || || |||| Sbjct 21512 CTTATATCTGCCAGAGTCAGTCGTTGAACATCCACATCGCCGACCCGACTATCAGTAAGC 21571 Query 113272 TCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 113327 | | || |||||| | ||| |||||||||||| ||||| || || ||||| ||| Sbjct 21572 TGACGTCCATGCACTTTTACGCTTGGAAGAAGGGACTCAAGACCGGCATGTACTAC 21627 >seq126 Length=136461 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || | || || || ||| || || ||||||||||| || || |||||| | Sbjct 10728 GAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCTGCTCC 10787 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || | |||||| |||||||| || |||||||| ||||| ||||||| |||||||| ||| Sbjct 10788 ATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACGAGCTCATC 10847 Query 102300 TCTCGTGACGAGGG 102313 |||||||||||| Sbjct 10848 AGTCGTGACGAGGG 10861 >seq101 Length=123959 Score = 100 bits (110), Expect = 4e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 176876 AGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCG 176935 ||||||| ||| | ||||||||| ||||| | || ||||| ||||||||||||||| Sbjct 87951 AGCTGTGCGACCGTGGCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCG 87892 Query 176936 TAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCC 176995 || || ||||| ||||| || | || || || || || || | ||||| ||||||||| Sbjct 87891 TACTGGTCGCGTCCAACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCC 87832 Query 176996 TCTGTCACGATGAGTGTACACTTGC 177020 || |||| || | || |||| || Sbjct 87831 TCCGTCAAAATCAATGAGCACTCGC 87807 >seq34 Length=72074 Score = 100 bits (110), Expect = 4e-16 Identities = 137/188 (73%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG--CGACTTCAAAGA 16122 || ||||||||||| ||||||| |||||| ||| | || ||| | ||||| | |||| Sbjct 28947 GCGTCAATCTCATCGATGAAGATGATGCACGGT-GCCTTCCGCTTGGCCGACT-CGAAGA 29004 Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182 | || || || || |||||||||||| || ||||||| | || | || | ||| Sbjct 29005 GGTCACGCACGCGACGGGCGCCCACACCTACGTACATCTCTTCGAACTCTGATCCAGAAG 29064 Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 | | || ||| ||||| || ||||| || || || || ||||| || |||||||||| Sbjct 29065 AATAGAAGAACGGGACGCCAGCCTCACCAGCGATAGCACGAGCGAGTAGCGTCTTACCCG 29124 Query 16243 TACCTGGC 16250 |||| ||| Sbjct 29125 TACCAGGC 29132 >seq601 Length=25350 Score = 96.9 bits (106), Expect = 4e-15 Identities = 251/376 (67%), Gaps = 10/376 (3%) Strand=Plus/Plus Query 176702 GGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCG 176761 |||||||||| |||||| | |||| | |||||||||||||| ||| |||| ||| Sbjct 14321 GGCCAGAAGTGGTGAATGAGGTTGATCACCAGACCCTTGATGTGACTACCATCGTGATCC 14380 Query 176762 GCATCCGTCATGATCATGAGACGACCATACCG-AAGCTCG-GAAACATCTTGATAGTCCT 176819 ||| | ||||||||| | | ||||| || |||| | | | | || | || | || Sbjct 14381 TGATCTGCCATGATCATCAAGTGGCCATAACGCAAGCCCTTGGTAGA-CTCG-TACTTCT 14438 Query 176820 TACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCT 176879 || | | ||||| | ||||| | || | || ||| | ||| || || Sbjct 14439 GGCCGTACTTGAGACCAAGAATCTTGACCACATTCTGGATCTCGTCGTTCTTCAGGATCT 14498 Query 176880 GTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGT 176939 ||| | ||| |||||||| || ||| || | | ||||||||||| |||| Sbjct 14499 GTGAGTGGCTGGCTTCACGAACGTTGAGCATCTTACCTCTCAACGGGAAGACACCATAGT 14558 Query 176940 GATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTG 176999 ||| | ||||| |||| |||||| | || || | ||| || || ||||| ||||| | Sbjct 14559 AATCTCTGCCAACAACAGCGAGACCGCCCACGGCAACCGTCTTGGCGGAATCTCCCTCCG 14618 Query 177000 TCACGATGAGTGTACA---CTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCA 177056 | | ||| || || || ||||| | || ||||| || | ||| ||||| |||| Sbjct 14619 TAAGGATCAGAGTGCAGTCCTTGC---TCTTCGCGGTACCAGCGTGGTTGGCATCGTCCA 14675 Query 177057 ATTTGGGAATACCAGT 177072 |||||| |||||||| Sbjct 14676 GTTTGGGGATACCAGT 14691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620701143908240