Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq135 161 2e-34 seq290 138 3e-27 seq188 138 3e-27 seq204 114 3e-20 seq510 87.8 4e-12 >seq135 Length=100430 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||| ||||| || || || ||||||||| || || | || || ||| Sbjct 42839 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCG 42898 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || ||||||||||| ||||| ||| Sbjct 42899 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGA 42958 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| ||||| || || | |||||| ||||| || ||||||| ||||| Sbjct 42959 ATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGGGTAATGGTCTTG 43018 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 43019 CCGGTCAACGTCTTCACGAAGATCTGCAT 43047 >seq290 Length=60535 Score = 138 bits (152), Expect = 3e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| || | ||||| | || || ||| Sbjct 10676 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTCCTCG 10617 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || || || || ||||| ||| Sbjct 10616 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGA 10557 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| |||||||| || |||||| ||||||| ||||| || || || | ||||| Sbjct 10556 ATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTG 10497 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || | || || ||||| | ||||||| Sbjct 10496 CCCGTAAGGGTCTTGACGAAAATCTGCATTT 10466 >seq188 Length=115905 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| ||| || || | || || || Sbjct 15170 ACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCC 15229 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || || ||||| || || |||||||| ||||| || Sbjct 15230 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGG 15289 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || |||||||||||||| || || | ||||||| ||||| || || || | |||||| Sbjct 15290 ATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTG 15349 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 15350 CCGGTCAAGGTCTTCACGAAGATCTGCAT 15378 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| ||| || || | || || || Sbjct 15398 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCC 15457 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || || ||||| || || |||||||| ||||| || Sbjct 15458 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGG 15517 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || |||||||||||||| || || | ||||||| ||||| || || || | |||||| Sbjct 15518 ATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTG 15577 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 15578 CCGGTCAAGGTCTTCACGAAAATCTGCAT 15606 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| || || || | || || || Sbjct 14714 ACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCACTCAGCGTGCGGCCGTCCTCC 14773 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || || ||||| || || |||||||| ||||| || Sbjct 14774 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGG 14833 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || |||||||||||||| || || | ||||||| ||||| || || || | |||||| Sbjct 14834 ATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTG 14893 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 14894 CCGGTCAAGGTCTTCACGAAGATCTGCAT 14922 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| || || || | || || || Sbjct 14942 ACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCACTCAGCGTGCGGCCGTCCTCC 15001 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || || ||||| || || |||||||| ||||| || Sbjct 15002 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGG 15061 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || |||||||||||||| || || | ||||||| ||||| || || || | |||||| Sbjct 15062 ATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTG 15121 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 15122 CCGGTCAAGGTCTTCACGAAGATCTGCAT 15150 >seq204 Length=54989 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| || | || || | || || ||||||||||| || |||||||| Sbjct 44400 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 44341 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || ||||| || || || || || ||||| || ||||| |||||||| || ||| Sbjct 44340 AGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 44281 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||| ||||||| ||||| || || || | ||||| || ||||| || || || || Sbjct 44280 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAG 44221 Query 195133 ACTTGCAT 195140 | ||||| Sbjct 44220 ATCTGCAT 44213 >seq510 Length=41021 Score = 87.8 bits (96), Expect = 4e-12 Identities = 177/256 (69%), Gaps = 5/256 (2%) Strand=Plus/Plus Query 160610 GATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAA 160669 ||||| ||||||||||||||| | | |||||| | ||||| | ||||||||||| ||| Sbjct 20421 GATCTCTTCATGAAGAGAGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAA 20480 Query 160670 GCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAGACTCTTTATGAAAGATACGAA 160729 || ||||| || | || || || ||||| || |||| ||||||| ||||| Sbjct 20481 GCTCCTGGTCTGTACGA-GTGCTGGGCGATGAGTTTGAAGCTCTGTATGAAAAGTACGAG 20539 Query 160730 AAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAGAACTGTGGCATCAC-ATCCTTGT 160788 || || ||| | || ||| | || || || | |||||| || | ||||| | Sbjct 20540 AAGGAAGGACGTGCGCGTAAGACAATCAACGCTCAGCAGCTGTGG-TTCGCTATCCTAGA 20598 Query 160789 CGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAGGATGCCATCT-GTCGCAAGA 160847 ||| || | ||| ||| ||||||| || |||||||| | || || |||||| Sbjct 20599 CGCTCAGATTGAGACGGGAGTGCCCTTCATGCTCTACAAGGACG-CAGCTAACCGCAAGT 20657 Query 160848 GTAACCAGAAGAACTT 160863 |||||| ||||||| Sbjct 20658 CGAACCAGCAGAACTT 20673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109406017606139