Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq111 154 1e-32 >seq111 Length=87890 Score = 154 bits (170), Expect = 1e-32 Identities = 402/604 (67%), Gaps = 17/604 (3%) Strand=Plus/Minus Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850 ||||| ||| || |||||||| || | |||||| ||||| ||||| | | |||| Sbjct 66421 AGCTGCTTCTGAAGGGGTTCCACATGGTTCAGGTACACGTGTGCGTCGCG-ATAACGTGG 66363 Query 29851 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG--AGGAGAGAGT 29908 | ||||| || |||| ||| || || || || || | || || |||| || || | || Sbjct 66362 ATGAACTCGCCAGGTTTTAGTCCCGTCACTTGTGCAACCA-GT-CGTGTCAGCAGCGCGT 66305 Query 29909 AGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGAC 29968 ||||||| ||||| || || || || || |||||||| |||| | |||||| | ||||| Sbjct 66304 AGCTGGCAATGTTGAAAGGCACTCCAAGACCCATGTCGGCCGATCGCTGGTACATCTGAC 66245 Query 29969 ACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCA 30028 |||| | || |||| | ||||| ||||| || | ||||||| || || || |||| Sbjct 66244 ACGATAATTCCCCGTTGGCAACGTAGAACTGGCAGAACATGTGGCAAGGCGGCAGGGCCA 66185 Query 30029 TGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30088 | | | || |||||||| || ||| | || || | ||| || || Sbjct 66184 TCTCGTTGAGATCGGCCGGGTTCCACGCCGACAGCACAATCCGTCGGTCAGTAGGATTCG 66125 Query 30089 TCCTGA---TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCT 30144 | | | || | ||| | ||| ||||| ||||| || || | ||||||| Sbjct 66124 TACGCAGCTTGTGAATCACCTC----TGCTAGCTGGTCCACACCTTGGCCAGTGTAGTCT 66069 Query 30145 GCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCC 30204 || |||||||||||||| || || || || | ||||||||| ||||| |||||||| Sbjct 66068 GCATGCATGTCCGTGTACTTGGCACCAAAGTGACGCCACTGGAAGCCGTAAACCGGTCCA 66009 Query 30205 AGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTG 30264 |||||||| | |||| | || | || | | |||| | | || | || || ||| Sbjct 66008 AGGTCTCCAACCTCCCGATCCTGCAGTCCTCGGCTATCCAGATACTCGCGCGATCCATTG 65949 Query 30265 GCGTCCCAGATCTTTACCCCCTTCT--CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30322 ||||||| || | | | |||| | |||| | || ||||| || || | Sbjct 65948 CCGTCCCAAATATGAATATCTTTCTGCTGCAGAG--TGTGGGCACTTGTGTCTCCACTAA 65891 Query 30323 CGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGG 30382 |||||||| |||||||| | || | ||| || |||| |||||||| || | | Sbjct 65890 TAAACCACAGTAGCTCCTCGGCTACACCTCGCCAGAACACCCGTTTGGTCGTCAGCAATG 65831 Query 30383 GAAA 30386 |||| Sbjct 65830 GAAA 65827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408591121196441