Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq510 223 6e-53 seq126 206 5e-48 >seq510 Length=41021 Score = 223 bits (246), Expect = 6e-53 Identities = 713/1087 (66%), Gaps = 47/1087 (4%) Strand=Plus/Minus Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 ||| || ||| ||| ||||| | | ||| | | | ||| | ||| || ||||| || Sbjct 21327 GTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGACGTGTAAGG 21268 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 |||||| ||||||||| ||||| ||||| || ||| |||||| |||||||| || || Sbjct 21267 CTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGTGCAAC 21208 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG-CGCCGA--AGCTCTGCCCAGTC 213085 ||| || ||| | | ||||| | |||| | | | || | ||||||| Sbjct 21207 CAGCAGCGAGTTACGGAGACCGTGTTTA---ATGACGTCATCTTTTAGTGCGGCCCAGTT 21151 Query 213086 CCATCTGCCAGAC--AGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCT 213143 ||| ||||| |||| | ||| ||||||||| ||||| ||||| || Sbjct 21150 CCAAAGCCCAGATGAAGGTG--------TGACGCCCCACATGTCGAACTGGAAGATACCC 21099 Query 213144 TTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAG 213203 || || | || ||||||| | | ||| || || ||| |||| | ||| Sbjct 21098 TTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTCCATC 21039 Query 213204 GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG-GC 213262 |||| || || |||||| ||||||| || || || || | | |||| | ||| | || Sbjct 21038 GACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAA-TTCACGAGC 20980 Query 213263 CTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCC 213322 | ||| | ||| | ||||| | |||| |||| ||||| |||||||| || Sbjct 20979 TTGCGGGCTCTCGAACGCGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCC 20920 Query 213323 GATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGT 213381 || || ||||| | || | || ||| |||||| |||| ||| | | || ||| ||| Sbjct 20919 AATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGC-CTCTGCAACAGGATAATAGT 20861 Query 213382 TGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACT 213441 || |||||||| ||||||||||||||| ||| ||| ||| || | ||| || Sbjct 20860 TGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCT 20801 Query 213442 CGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGT 213501 || | ||||| | |||| | ||||||| |||||| || | |||| || Sbjct 20800 TGTAGTCGAACA------CACCGTTTTCCACAAACATAGGCAGCGCCACAGACGCCAAGT 20747 Query 213502 TGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTG 213560 |||| || |||||||| | | | | | ||||||||||||| ||| ||| | ||||||| Sbjct 20746 TGCACACTGCCACCTCATCGGGTGAC-GTGTACTCCATGACTTCGCAGCATAAGTTGCTG 20688 Query 213561 CATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGC 213620 | ||||| || ||| |||||| ||||| ||||| ||| || | |||||||||||| Sbjct 20687 GAACGGATCGT-ACCAAGTTCTGCTGGTTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGC 20629 Query 213621 ATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCC 213680 ||| |||| || ||||| | ||| | | || || | ||| || | | || Sbjct 20628 ATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCACAGCTGCTGAGCG 20569 Query 213681 TTGACCACCCGCCTGACAGCTCCGGGCGTAGC--CTCGTACTGTTCGTAGAGCTCGTTGA 213738 |||| | || || || | | | | | |||||||| ||| || || | | | Sbjct 20568 TTGA----TTGTCTTAC-GCGCACGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTCAA 20514 Query 213739 ATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGC---GGGACACATGAGGCTCC 213795 | || | | ||||| | || ||| || ||| | | | |||||| | | |||| Sbjct 20513 ACTCATCG-CCCAGCACTCGTACAGACCAGGA---GCTTCGTTGGGACAGAACAAACTCC 20458 Query 213796 AGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACA 213855 | | || | | ||||||| |||||| || || || |||||||||||| |||| Sbjct 20457 ACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACA 20398 Query 213856 GGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGA 213915 ||| | || | | || || ||| || |||||||| || || || || | Sbjct 20397 AGTCGC-GGCGCGGTGCAGCTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACA 20339 Query 213916 TGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCT 213972 ||| |||||||||||||||| |||||| || || | |||| | ||| ||||||| Sbjct 20338 CGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCT 20279 Query 213973 GGTCCAC 213979 ||||||| Sbjct 20278 GGTCCAC 20272 >seq126 Length=136461 Score = 206 bits (228), Expect = 5e-48 Identities = 484/726 (67%), Gaps = 11/726 (2%) Strand=Plus/Minus Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 ||||| | || || ||| |||| ||||| | ||||||||| |||||| || || Sbjct 11056 AGCAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATC 10997 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || ||| || | | | | |||||| | ||| ||| ||| || || | | Sbjct 10996 AGCTCCACAGGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATG 10937 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 |||| | || ||| ||||| | ||| || ||| ||||| || | | |||| Sbjct 10936 ATCTCGTGTACACGGCTCTCTGGCAGCTTGGTGACCAG---CTTGGAGTACAAAAGGCAG 10880 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 || |||||| |||||| ||| ||||| || ||||||||| |||| ||||||| ||||| Sbjct 10879 GCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCG 10820 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||||| || | || || ||||| || || | ||||||||| |||||||||||| Sbjct 10819 GGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATG 10760 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG-AGAT 48312 || ||||| || ||||| || || | ||| | | || || | | | | | Sbjct 10759 CCTTCCACAGCAGCGAAAGCCAGCAGGCGCTC-CGGGTAGGAGGATACACGCGGGTCGCA 10701 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 ||| || ||||||| ||||||||| ||| || || || ||||| ||||| || | Sbjct 10700 CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAG 10641 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACAT 48429 ||| | | ||| |||||| | || || | ||||||| || ||| | Sbjct 10640 GAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAG---TGAGTAGAC 10584 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 ||| ||||| | ||||| || ||||||||||| || |||||| | ||||| ||| Sbjct 10583 CTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGGCAC 10524 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 ||||||||| || ||| || || ||||| || || || || || || || Sbjct 10523 CTGCACTTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTGGCTGC 10464 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC 48609 |||||||| || || || || | ||| || |||||||||| ||||| ||||| | Sbjct 10463 GAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTCCAGTC 10404 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 || | ||| | | ||||| | || || | ||||||||||| || ||||| || Sbjct 10403 CTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCTTTCTT 10344 Query 48670 GTACAT 48675 |||||| Sbjct 10343 GTACAT 10338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931470888001280