Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq510 152 6e-32 seq126 120 4e-22 seq601 82.4 9e-11 >seq510 Length=41021 Score = 152 bits (168), Expect = 6e-32 Identities = 422/637 (66%), Gaps = 10/637 (2%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| | ||| | |||| || || | ||||||||| | ||||| | || | Sbjct 19916 CCGCAGCAAATGATTCTGCGTGTAGCGTTAGGCATCCACAAGAGCGACATCAAGTCCGCA 19975 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 ||||||| ||||| ||||| || | || | |||| ||||| || || || ||||| Sbjct 19976 CTGGAGACGTACGAGCTCATGTCGCAGAAGT-TCTTCACGCACGCCACCCCTACTCTCTT 20034 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || || || ||| | || ||| |||| ||||||||| | || | |||| || Sbjct 20035 CAACGCCGGCACGCCACGTCCTCAGTTGTCTTCTTGCTTCCTATTGGCTATGCAGGATGA 20094 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| || | || || || | || || | | | || || ||||| || ||||| || Sbjct 20095 CTCTATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGG 20154 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAA 75509 ||||| || || || || | | | |||| ||| | || || || || || | Sbjct 20155 CGGTATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGCTAC-ATCCGCGGCACGA 20213 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | || || | || ||||| ||| || | || || ||||||| ||| || ||||||| Sbjct 20214 ACGGCTCCTCTAACGGCATTATCCCA-TGTTGCGTGTGTTTAACGACACGGCTCGCTATG 20272 Query 75570 TAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATG 75626 | | || | || || |||||||| || |||| |||||||||| || ||||| | Sbjct 20273 TGGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACG 20332 Query 75627 CCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTA 75686 |||| | | |||||||| || | || ||||| ||| | || | || | | | Sbjct 20333 CCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGA-GCTGCACCGCGCC 20391 Query 75687 GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTG 75746 | || | |||| | |||||| | || || || ||||||||| | || |||| || Sbjct 20392 GCGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAGGCCAATG 20451 Query 75747 GTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGG 75806 | | ||| | | |||||||| || | || || ||||| | ||| | | |||| || | Sbjct 20452 GCAAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCTGGTCTGTACGA-GTGCTGGGCGATG 20510 Query 75807 AGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGG 75843 |||||||||| || || |||||| || |||| || Sbjct 20511 AGTTTGAAGCTCTGTATGAAAAGTACGAGAAGGAAGG 20547 >seq126 Length=136461 Score = 120 bits (132), Expect = 4e-22 Identities = 379/575 (66%), Gaps = 12/575 (2%) Strand=Plus/Plus Query 64948 ATTGACAAATACATTAAGGATG-GATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAAC 65006 ||||||| ||||| ||||| | |||| || ||| | || | | ||||| | || Sbjct 10599 ATTGACACGTACATCAAGGACGCGATC-GAGAAGGACCATCTCCTGCGTGCCATTGAGAC 10657 Query 65007 TGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAA-GTCTC 65065 | || ||| | ||||||||| | |||||| | || |||| ||| | || || Sbjct 10658 CATCCCTTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGCGTGTATC 10717 Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 ||||| | | |||||||| | || || || |||||| || ||||||||||| || | Sbjct 10718 -CTCCTACCCGGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCT 10776 Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185 | |||||| | || | |||| | |||||||| || |||||||| || || ||||||| | Sbjct 10777 CTTTCTGCTCCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGA 10836 Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGA 65245 | || || || || || ||||| | ||| ||| || ||| || || || | Sbjct 10837 ACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCC-TG--CCTTTTGTACT 10893 Query 65246 CTTTGC--GTAATAGACCCACTACCGAAAC-TATCCACGCCATCGTGAAAGAGGCGGTTG 65302 | || || | | | | | || | | | |||| ||| | || || || | Sbjct 10894 CCAAGCTGGTCACCAAGCTGCCAGAGAGCCGTGTACACGAGATCATTCGTGACGCTGTGG 10953 Query 65303 AGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGT-AATCTCATCGGTATGAACTCT 65361 ||||||| | | ||| | ||| | ||||| ||| | || || |||||||||||| Sbjct 10954 TGATTGAGCACGAGTTTGTGCGTGACTCGCTCCC-TGTGGAGCTGATTGGTATGAACTCT 11012 Query 65362 GAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTG 65421 | |||| | |||||||||||| ||| | || ||||| ||| | |||| ||| Sbjct 11013 GCCCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTCTACTCGCTTGGTGTG 11072 Query 65422 CCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGG 65481 | || | |||| ||||| || ||||||| ||||| | || || | || Sbjct 11073 TCCAAGATCTACCACGCTAAGAACCCTTTTGACTGGATGGACATGATCTCTCTCCAAGGC 11132 Query 65482 AAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||||||||||| || |||||||| || || || || Sbjct 11133 AAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTA 11167 >seq601 Length=25350 Score = 82.4 bits (90), Expect = 9e-11 Identities = 234/355 (66%), Gaps = 6/355 (2%) Strand=Plus/Minus Query 14432 AAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCATGGTGAAGTA 14491 ||||||||||| |||| | || || | || | ||||| ||||| || ||||| | Sbjct 13658 AAGGTGGCACAGTTGGCTGGCTACGTGTCTGAGCACTCTGCCTACCATCACGGTGAGCAA 13599 Query 14492 TCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAACAACATTAAC 14551 || || | || || || |||| | |||| | || |||||||| || Sbjct 13598 AGTCTACAGGGCTGTATCGTGAATATGGCGCAGGACTTCGTTGGCAGCAACAACATCCAC 13539 Query 14552 CTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGGATGCTTCTCAG 14611 || || ||| |||||| || ||||||||||| ||||||||||| || | | ||| Sbjct 13538 CTACTGTCCCCGATTGGTCAGTTCGGTACGCGTCTGATGGGTGGTAAAGACTCGGC-CAG 13480 Query 14612 -ACGAGGTACATTTTCACAAAACTTACCAAGGAGGCTCGCAAGATCTTTGATCCTCGGGA 14670 | | || |||||||| || || || ||||| |||| |||||| ||| Sbjct 13479 TGCTCGTTATATTTTCACCAACCTAGAGCAGCTTACTCGCCGTATCTACGATCCTTTGGA 13420 Query 14671 TGACCCGAT--CCTCAACTACTTGGACGATGATGGACGCTCCATTGAACCAGACTTTTAC 14728 | |||| || || || || | || || || | ||||| || || || | ||| Sbjct 13419 CAA--CGATTGTCTGAAGTATCTGAATGAAGACGGCCAGTCCATCGAGCCGGAATGGTAC 13362 Query 14729 ATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTACGGGTT 14783 || |||| | | || ||||| |||||||| || | || |||||||| ||||||| Sbjct 13361 ATCCCAATTATCCCCATGGTGCTCGTGAACGGCAGTGACGGTATCGGAACGGGTT 13307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596529950492960