Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq392 136 1e-26 seq281 107 6e-18 seq507 93.3 1e-13 seq2443 84.2 6e-11 seq1480 84.2 6e-11 >seq392 Length=32506 Score = 136 bits (150), Expect = 1e-26 Identities = 207/292 (71%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 |||||| | | |||| | |||||| ||||| | |||||||| || || ||||| Sbjct 16488 ATCATAGCGAGTCATGACCGATTCCATTGCCTTGACAAGTCGACGCTGGATGTATCCAGT 16547 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | || || |||||||||||||| ||||| |||||||||||||||| |||||||| Sbjct 16548 CTCGGCCGTCTTCACAGCTGTATCAATCAGACCTTCACGACCACCCATAGCGTGGAAGAA 16607 Query 302673 TAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGG 302731 | ||||| ||| ||| | ||| | | ||| | || ||||||||||| ||||| Sbjct 16608 AAACTCTTGCGG-CGTCAAACCCTTCAGGTACGAGTTTTCCACGAAACCACGACTCTCGG 16666 Query 302732 GCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATAC 302791 | ||| |||| | |||||||||| || | | | | ||||| ||||| | Sbjct 16667 GACCCAGGTCATCCTTGCCATAGTGTGGCAGTGTACGATGGTTGAAACCGTACGGGATTC 16726 Query 302792 GCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||| || |||||||||||||| |||| || | || ||||| || ||||| Sbjct 16727 GCTTACCTTCAACGTTCTGCTGACCCACACAAGCGATAATCTGGGAGATATT 16778 >seq281 Length=67450 Score = 107 bits (118), Expect = 6e-18 Identities = 178/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 ||||| | ||| || ||| ||||| || || | || || || || | || |||| Sbjct 38694 GCGATGATACCGCAGATATCGCACACGTGCACACGATACGCGTCCGAGTTGGCAAATAGT 38635 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 ||| || || |||| | | ||||| || |||| |||||| ||||||||||| || Sbjct 38634 CGATCCATGAGGAAGTTGGCCGAGCCGTGGGAGATCAGACAATCGCGCTCCATTTCTCCC 38575 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583 | || |||||||| || ||||| | ||| || |||||||| || | | || | Sbjct 38574 ATTCGCAGACCACCTTCACGAGCACGACCTTCCATGGGCTGACGCGTCAACATCGTCACA 38515 Query 251584 GGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAAT 251643 ||||| || || || |||||| | ||||||||||| |||||||||||||| Sbjct 38514 GGACCACGAGAACGCGAGTGGATCTTATCGTCGACCATATGCTTCAGACGCTGGTAGAAC 38455 Query 251644 GCGGGACCGATGAAGAT 251660 | ||| || |||||||| Sbjct 38454 GTGGGTCCAATGAAGAT 38438 >seq507 Length=28664 Score = 93.3 bits (102), Expect = 1e-13 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | || || |||||||||||||| ||||| ||| | || || || || || Sbjct 17209 CTTGATGGCCGAAGCAAGGGCACCAAGCGAGTCGCGGTCAAGGTAGTTCGTGGGCTCATC 17150 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 ||| | || | |||||| | || |||||| || || ||||| || ||||| |||||||| Sbjct 17149 AAGCACCAGGATGTGCGGGTTCAGCCACATAGCAGCGGCCAGCACAACCTTCACCTTCTG 17090 Query 354123 TCCGCCTGATAGTGCGTGAATCTTGGAATATGTACCGAACTGCGATTCAAGGTTGAAATG 354182 || || || || | | || || | |||||||||| | | ||| ||| Sbjct 17089 ACCACCGGACAGACCACGCATGCGCGAGTGGGTACCGAACTCGGCACCCAGGCCGAAGCA 17030 Query 354183 GTCGAGATGTTTCTGTACG 354201 |||||| || ||||| ||| Sbjct 17029 GTCGAGGTGCTTCTGCACG 17011 >seq2443 Length=8684 Score = 84.2 bits (92), Expect = 6e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 410480 TTTATGTGCCCGCGTGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGG 410539 ||| || || || || ||||||||||||||| |||||||| ||||||| |||||||| Sbjct 562 TTTGTGAGCGCGGCTGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGGG 621 Query 410540 TTCGAGTCC--CGTCGTGGGTAAttttttt 410567 ||||||||| ||||| | || ||||||| Sbjct 622 TTCGAGTCCCGCGTCGCGTATACTTTTTTT 651 >seq1480 Length=10474 Score = 84.2 bits (92), Expect = 6e-11 Identities = 68/80 (85%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 410494 TGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCGAGTCCCGTCG 410553 || ||||||||||||||| |||||||| ||||||| ||||||||||||||||||| || Sbjct 7120 TGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGGGTTCGAGTCCCG-CG 7178 Query 410554 T-GGGTAAtttttttAATTT 410572 | | |||||| ||| | ||| Sbjct 7179 TCGCGTAATTCTTTGATTTT 7198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471717333805829