Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq126 185 1e-40 seq510 141 1e-27 seq253 134 2e-25 seq1455 123 3e-22 seq60 122 1e-21 seq164 116 5e-20 seq133 91.5 2e-12 >seq126 Length=136461 Score = 185 bits (204), Expect = 1e-40 Identities = 222/299 (74%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||| |||||||| ||||||||||||||||| || ||| | |||| | ||| | Sbjct 10581 CCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGGCACCT 10522 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || || || |||| ||||| ||||||| |||||| ||||| ||||| |||| Sbjct 10521 GCACTTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTGGCTGCGA 10462 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || || || ||||||||||| ||||| ||||||| ||| ||||| ||||| Sbjct 10461 AGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTCCAGTCCT 10402 Query 869811 CGGTGTCG-GCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | |||| || | ||||| | |||||| || ||||||| ||||||||||| || ||| Sbjct 10401 TGAGGTCGTGCAC-AAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCTTTCTTG 10343 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 ||||||| ||| |||| || | | || ||||| || || || ||||||||||| || Sbjct 10342 TACATCTGCCACACTTCGTGTTCCTGAATGGGGAACAGCACGAAACGGTTGGGGTTCTC 10284 Score = 179 bits (198), Expect = 5e-39 Identities = 234/316 (74%), Gaps = 6/316 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||||| |||||||||||| ||| ||||||||||||||||||||| | ||| |||||| Sbjct 11176 GCCTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATC 11117 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTT-CGCATCCGAGCGACGC 868809 | |||||||| || ||||| | | |||| ||| | || || ||||| Sbjct 11116 ATGTCCATCCAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACA-CCAAGCGAGTA 11058 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 |||||| ||||| || || ||||| |||||||||||||||||| | | |||||| || || Sbjct 11057 GAGCAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAAT 10998 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACG-A 868928 ||| |||| || ||||| || | ||||||||| | ||| ||| | || || || ||| | Sbjct 10997 CAGCTCCACAGGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTC-ACGAA 10939 Query 868929 TGATCTGCCTGGGCACGTC-GGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 |||||| | || |||| | | | ||||| |||| ||| | | ||| | |||||| Sbjct 10938 TGATCT-CGTGTACACGGCTCTCTGGCAGCTTGGTGACCAGCTTGGAGTACAAAAGGCAG 10880 Query 868988 GCAAAGTCGCAGTGCA 869003 || ||||| ||||| Sbjct 10879 GCGAAGTCCGTGTGCA 10864 Score = 150 bits (166), Expect = 2e-30 Identities = 208/286 (73%), Gaps = 5/286 (2%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| |||||||| | ||||| ||| || ||||||||||||||||||||| Sbjct 10861 CCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATGAGGCCGCGCTTC 10802 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC-AAA 869298 || ||||||||||||| ||||||| ||||||||| |||||||| || || || || ||| Sbjct 10801 TTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCCACAGCAGCGAAA 10742 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 ||| | || ||||| | ||| | || | | | || | |||||| | ||||| Sbjct 10741 GCC-AGCAGGCGCTCCGGGTAGGAG--GATACAC-GCGGGTCGCACCACTTGAGTGCCCA 10686 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 || ||||| ||| | || | || | || || ||||| || | ||| |||||||| || Sbjct 10685 GTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAGATGGTCCTTCTC 10626 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 | || |||||||| || ||||| || || || || ||| |||| Sbjct 10625 GATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTAGACCTCC 10580 >seq510 Length=41021 Score = 141 bits (156), Expect = 1e-27 Identities = 214/303 (71%), Gaps = 1/303 (0%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||| || ||||| |||||||||||||| || || | |||||| | | |||||| Sbjct 20283 GCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGG-ATAATGCCGTT 20225 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 || |||||| ||||| | |||| | | |||||| | |||||| | Sbjct 20224 AGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGAT 20165 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 ||||| ||||| ||| | || ||||| ||||| || || || |||||||| ||||| Sbjct 20164 ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCC 20105 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 ||| || ||||| ||| ||| ||| || ||||| || || || || | | ||| Sbjct 20104 CTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGAAGACAACTGAGGACGTGGCGT 20045 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 ||||||||||||||| || || || || ||||| |||| | |||||||| ||||| Sbjct 20044 GCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTA 19985 Query 1630362 GGT 1630364 || Sbjct 19984 CGT 19982 Score = 120 bits (132), Expect = 4e-21 Identities = 268/406 (66%), Gaps = 9/406 (2%) Strand=Plus/Minus Query 1628198 TCGTACCCAGGTTCTGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGG 1628257 ||||||| || ||||||||||| | | |||| | |||||||||| ||||||| ||| Sbjct 20680 TCGTACCAAG-TTCTGCTGGTTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGG 20622 Query 1628258 GCGCGCCGGTCTCGATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGA 1628317 || | || ||||| ||||| || | | ||| || |||| | ||| | ||| || Sbjct 20621 GCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCACAGCTGCTGAGCGTT---GA 20565 Query 1628318 CAGTC---CGCGCGCGGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGC 1628374 ||| ||||| || || | ||||| | ||| Sbjct 20564 TTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTCAAACTCATCGC 20505 Query 1628375 CGTAGCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGG 1628434 | ||||||||| ||| || || || ||| ||||| || | ||| | |||| || Sbjct 20504 CC-AGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTTGCCATTGG 20446 Query 1628435 TCACCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCC 1628494 | || | | ||| ||||| ||| | |||||| |||||||| | |||||| || | Sbjct 20445 CCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCGCG-GCGC 20387 Query 1628495 GGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCC 1628554 ||| | ||| || ||||||||||| || || || | |||| | ||||||||||| Sbjct 20386 GGTGCAGCTCATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCGTGCC 20327 Query 1628555 ACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||||||||| |||| || || | |||||||||||| || ||||| Sbjct 20326 ACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCC 20281 >seq253 Length=136666 Score = 134 bits (148), Expect = 2e-25 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| | | || || |||||||| |||||||||||||| || | ||| Sbjct 36684 GCCAGCTCACCGGGGAGCATGAGACGCACGGCAGTCTGGATCTCGCGGCTGGACAGCGTC 36625 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| | ||| ||| ||||||||| | | ||||||| |||| |||||| Sbjct 36624 GACTTCTTGTTGTAACGCGACAGCTTGCCGGCCTCCGAGGCGATGCGCTCGAAAATGTCG 36565 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTG-TTGGAGATGCCCACGTCGGGGTGCAC 1254526 |||| ||||||||||||| |||||| | | | ||| ||| ||| |||||||||||| Sbjct 36564 TTGATGAACGAGTTCATGATCGACAT-GCCGCGCTTGCTGATACCCGTGTCGGGGTGCAC 36506 Query 1254527 CTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||| ||||||||||||||| | | ||||||||| Sbjct 36505 CTGACGCAGCACCTTGTAGATGTAGGTCGAGTACGA 36470 >seq1455 Length=23779 Score = 123 bits (136), Expect = 3e-22 Identities = 253/370 (68%), Gaps = 6/370 (2%) Strand=Plus/Minus Query 1573873 ACATGCCCAACCTCTTGCTGGCGGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGT 1573932 ||||| | || ||| | || | || || || || || || || || |||||||| || Sbjct 19367 ACATGACGAATCTCATCCTCTCCGGCCCTCCAGGAACTGGTAAAACAACGAGCATTTTGT 19308 Query 1573933 GTCTGGCGCGTGTCCTCTTGGGCGCGGCCGC-CGACG-AGGCCGTGCTCGAACTCAACGC 1573990 |||||||||| | | | || || | || ||| | |||| ||||| || ||||| || Sbjct 19307 GTCTGGCGCGCGAGTTGCTCGGTGC--CAGCACGAAGCAGGCGGTGCTGGAGCTCAATGC 19250 Query 1573991 GTCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAG 1574050 ||| || || ||||| ||||| || |||| | |||||| ||| ||| Sbjct 19249 GTCCGATGATCGCGGTATCGACACGGTACGCAGTAAGATCAAGATGTTCGCGCAGCAGAA 19190 Query 1574051 GATCGAC-CTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCA 1574109 | | ||| || || || |||||||||||| | |||| | ||||||||||||| | | Sbjct 19189 GGT-GACACTTCCCCCTGGACGCCACAAGATCGTCATATTGGACGAGGCCGACTCAATGA 19131 Query 1574110 CGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCT 1574169 | | || ||||||||||| || || || ||||| | | | |||||||| | Sbjct 19130 CAGCTGCAGCCCAGCAGGCTCTACGACGTACTATGGAGATCTTCTCGGCAACGACGCGAT 19071 Query 1574170 TTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCA 1574229 | || |||| ||||||| || | | | |||| ||| || | || ||||||||||||| Sbjct 19070 TCGCATTGGCCTGCAACAACTCCACCAAGATCATTGAGCCCATTCAGAGTCGCTGCGCCA 19011 Query 1574230 TTCTGCGCTT 1574239 | ||||| || Sbjct 19010 TCCTGCGTTT 19001 >seq60 Length=114729 Score = 122 bits (134), Expect = 1e-21 Identities = 287/431 (67%), Gaps = 2/431 (0%) Strand=Plus/Minus Query 18060 CATGAGCACATTCGGCAAGGTATTTAGGGTCACCACCTTTGGCGAGTCGCACGGGGCGGG 18119 ||||||||| |||||| | || | || || ||||| |||||||||||| | ||| Sbjct 53088 CATGAGCACCTTCGGCCGCTTCTTCCGCGTGACGACCTTCGGCGAGTCGCACTGCAAGGG 53029 Query 18120 CGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCA 18179 ||| ||||||||| | || ||||| || |||| | | || | ||||| |||||||| Sbjct 53028 CGTGGGCTGCATCGTGGATGGCGTTCCCCCGTCGCTCGCTTTGACAGAGGCTGACATCCA 52969 Query 18180 GCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGCC 18239 ||| ||| | || || || || |||||| || || | || |||||| ||||| Sbjct 52968 GCCGCAGCTCACGCGCCGTCGCCCCGGCCAGAGCAAGCTCACGACCCCGCGCGACGAGAA 52909 Query 18240 CGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGG 18299 || || | ||| | ||||| ||||| ||| ||||||| ||| |||| | | Sbjct 52908 GGACATGGTGACTATCATGAGCGGCACTGAGAAGGGCTTCACGCTTGGCACGCCGCTTGC 52849 Query 18300 CCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCC 18359 ||||| ||| ||||| || ||| || || || || ||| ||||| Sbjct 52848 ACTCTTCGTGCCCAACGAAAACGTGCGCCCTAAGGATTACAAGGAGATGGATCTTGTGCC 52789 Query 18360 GCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG-G 18418 || || ||||| |||||||| ||| | |||||||||| | | | | | | Sbjct 52788 TCGCCCGGGCCACGCAGACTACACGTACCAGATGAAGTACGGCA-CGCGCGCTAGCAGCG 52730 Query 18419 GCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCG 18478 |||| ||||| | ||| ||||| ||| | || || || || ||||| || |||| Sbjct 52729 GCGGTGGCCGTGCCAGTGCTCGCGAAACCATTGGCCGTGTAGCAGCTGGCGCTGTGGCCG 52670 Query 18479 AGAAATGGCTC 18489 |||| |||||| Sbjct 52669 AGAAGTGGCTC 52659 Score = 105 bits (116), Expect = 8e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 19065 GTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGCTTTGACAAGATC 19124 || ||||| ||| ||||||| ||| | || || || ||||| || || |||||||| Sbjct 52224 GTCACGTGTGTGATCCGCAACGCGCCCGTGGGTCTGGGTGAGCCATGTTTCGACAAGATG 52165 Query 19125 GAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 |||||| || || ||||||||| |||| ||||||||||||||||| |||||||| ||| Sbjct 52164 CAGGCCGTCCTTGCACACGCCATGATGTCCATCCCGGCCACCAAGGGCTTCGAGATCGGC 52105 Query 19185 AGCGGGTT 19192 ||| || Sbjct 52104 TCCGGTTT 52097 >seq164 Length=163168 Score = 116 bits (128), Expect = 5e-20 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| | | || || ||||| || ||||||||||| || || | ||| Sbjct 89802 GCCAGCTCACCGGGGAGCATGAGACGCACAGCCGTCTGGATCTCACGGCTGGACAGGGTG 89743 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| | ||| ||| ||||||||| | ||||||| |||| |||||| Sbjct 89742 GACTTCTTGTTGTAACGCGACAGCTTGCCGGCCTCCGAAGCGATGCGCTCGAAAATGTCG 89683 Query 1254468 TTGACAAACGAGTTCATGACCGACAT-CGACTTGTTGGAGATGCCCACGTCGGGGTGCAC 1254526 |||| || |||||||||| |||||| | || ||| ||| ||| |||||||||||| Sbjct 89682 TTGATGAAGGAGTTCATGATCGACATTCCACGC-TTGCTGATACCCGTGTCGGGGTGCAC 89624 Query 1254527 CTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||| ||||||||||||||| | | ||||||||| Sbjct 89623 CTGACGCAGCACCTTGTAGATGTAGGTCGAGTACGA 89588 >seq133 Length=52418 Score = 91.5 bits (100), Expect = 2e-12 Identities = 193/288 (67%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 92624 CTCCTGCACCTGGAAGCGGTCGGAAAACATGTCGACGATGCGCGGGATCTTGCTCAGGCC 92683 |||||||||||| | || || || | ||| || |||| | |||||| || || Sbjct 29467 CTCCTGCACCTGCAGACGACGCGAGAAGACCTCGCTGACTCGCGCCAGCTTGCTGAGTCC 29526 Query 92684 GATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGGCCTTGCCCATAAAGGGCAGCAGATG 92743 | | |||| |||| | ||| || | ||| | |||||| | || |||| || || Sbjct 29527 CAATACTTTGCCATTGGGGATGTACCCGATGTGCACTTTGCCCGTGAACGGCACCATGTG 29586 Query 92744 GTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACGATCACCATCTCGCCCGAGGCCTC 92803 |||||||||||||||| | | ||||| || ||||| || ||||||||| | | |||| Sbjct 29587 GTGCTCGCACATGGAGTAGAGGTCGATATCACGCACAATGACCATCTCGTCGTGGTCCTC 29646 Query 92804 GGCAAAGAGCGCGTCGCCGATGGCCTCGGCCAGCGTCATGCGGTGGCCGCGCGTGCGCTC 92863 |||| | || ||| | | |||| || || || || ||| ||| | Sbjct 29647 TTCAAACACAGCCTCGTTCAATACGTCGGTTAGGCTCTGGCCGTAGCCCTTGGTGTTGTA 29706 Query 92864 CACCATGGCCTTGGCCACGCGCATCGGCGTGTCCAGGAGGCCCTCGCG 92911 || | ||||||||||| |||||| ||||| | | ||| || ||||| Sbjct 29707 CAATAAGGCCTTGGCCATGCGCATAGGCGTCTTGACGAGCCCTTCGCG 29754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106702862080489