Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq510 127 2e-24 seq188 113 4e-20 seq135 111 1e-19 seq204 82.4 7e-11 >seq510 Length=41021 Score = 127 bits (140), Expect = 2e-24 Identities = 356/539 (66%), Gaps = 33/539 (6%) Strand=Plus/Minus Query 138484 TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAA 138543 || || |||||||| |||| | || | || ||||| ||||| || ||||| ||| Sbjct 21344 TCCTTCATCAGATACTTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTAC 21285 Query 138544 ATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCG 138603 |||||| ||| ||||||| | || |||||||| ||||| ||||||||||||| || Sbjct 21284 ATGTTGGACGTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCT 21225 Query 138604 GTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGT--TCCT 138661 ||||||||| || |||| || || || || | |||||| ||| ||| || | Sbjct 21224 GTCGGCATGGGTGCAACCAGCAGCGAGTTACGGAGACCGTGTTTAATGA--CGTCATCTT 21167 Query 138662 TGAGCGACGACCAGTCCCACAAATC-GCT--AGGTTTTTTGTTCCACATATCGTACTGTA 138718 | || | | ||||| ||| | | | | |||| | | |||||| ||| |||| | Sbjct 21166 TTAGTGCGGCCCAGTTCCAAAGCCCAGATGAAGGTGTGACGCCCCACATGTCGAACTGGA 21107 Query 138719 ACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCA 138778 | || ||| ||| || ||| ||| | | ||| ||||| ||| || || || | Sbjct 21106 AGATACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAA 21047 Query 138779 ACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCA 138838 ||| | || ||| | ||| || |||| || || ||| || || | ||| || Sbjct 21046 TCTCCATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCG--AAGATG-TTCTTGTTCA 20990 Query 138839 AT---CGGGCCTCGGCGCTCTCGTACG------GCATGCGGAGCATCGTGAACGCGTCGG 138889 || || || | | ||||||| ||| |||| ||| ||||||| || | Sbjct 20989 ATTCACGAGCTTGCGGGCTCTCGAACGCGTAGTTCATGAGGA------TGAACGCATCCG 20936 Query 138890 CCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG---- 138945 |||| || || ||||| | || | || |||||||||| || ||| ||||| Sbjct 20935 CCAGACCCTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGAC----TTGCGAGCC 20880 Query 138946 GCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTT 139004 || | | |||||||||||| || ||||||| ||||| | || ||| || |||||| Sbjct 20879 TCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTT 20821 Score = 84.2 bits (92), Expect = 2e-11 Identities = 244/374 (65%), Gaps = 4/374 (1%) Strand=Plus/Minus Query 139492 AGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGT 139551 ||||| || || ||||| |||||||| || |||| ||||| || | | ||| || || Sbjct 20351 AGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGC 20292 Query 139552 TTGCCACCT---TGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCC 139608 || || || || || || | || | | | || || || |||||||| || | Sbjct 20291 TTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGATAA 20232 Query 139609 AGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGT 139668 | ||| | | | ||||| |||| |||||| ||||| || |||| || || Sbjct 20231 TG-CCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGC 20173 Query 139669 ACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCG 139728 | | |||| ||||| ||||| | |||| || || | |||| | || || ||| Sbjct 20172 ATACTGATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCG 20113 Query 139729 TATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGT 139788 || || || || ||| |||||||| | | || ||||| || || | || || Sbjct 20112 TAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGAAGACAACTGAGGA 20053 Query 139789 AGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATC 139848 || ||||||||| || |||||||| | ||||||||||| | | | |||||| Sbjct 20052 CGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAACTTCTGCGACATG 19993 Query 139849 AATTCGTACGTTTC 139862 | |||||||| || Sbjct 19992 AGCTCGTACGTCTC 19979 >seq188 Length=115905 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || ||||| || || || | | Sbjct 14922 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 14863 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||||| ||||| ||||| || || || || || Sbjct 14862 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 14803 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| || || || ||||||||||| | | || || || ||| Sbjct 14802 CAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGTGACTACAAC 14743 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || ||||| ||| ||||| |||| |||| || || Sbjct 14742 ATCCAGAAGGAGTCTACACTCCACCTGGTGCTGCGTCTGCGTGGCGG 14696 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || ||||| || || || | | Sbjct 15150 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 15091 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||||| ||||| ||||| || || || || || Sbjct 15090 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 15031 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| || || || ||||||||||| | | || || || ||| Sbjct 15030 CAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGTGACTACAAC 14971 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || ||||| ||| ||||| |||| |||| || || Sbjct 14970 ATCCAGAAGGAGTCTACACTCCACCTGGTGCTGCGTCTGCGAGGCGG 14924 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || ||||| || || || | | Sbjct 15378 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 15319 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||||| ||||| ||||| || || || || || Sbjct 15318 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 15259 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| || || || ||||||||||| | | || || || ||| Sbjct 15258 CAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 15199 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || ||||| ||| ||||| |||| Sbjct 15198 ATCCAGAAGGAGTCTACACTCCACCTGGTGCTGCG 15164 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || | ||||| || || || ||||| || || || | | Sbjct 15607 GATGCAGATTTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTC 15548 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || ||||||||||| ||||| ||||| || || || || || Sbjct 15547 GGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCA 15488 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||||||||||| || || || ||||||||||| | | || || || || Sbjct 15487 GCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 15428 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || ||| ||||| |||| |||| || || Sbjct 15427 CATCCAGAAGGAGTCTACGCTCCACCTGGTGCTGCGTCTGCGAGGCGG 15380 >seq135 Length=100430 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 24697 TGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGA 24756 ||| | |||||||||||| | || ||| | ||||| || || ||||| ||||| || || Sbjct 43054 TGAGAAGATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGA 42995 Query 24757 AGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCC 24816 | | ||| | | || | || || || ||||| || ||||| ||||| || || || Sbjct 42994 GCCGTCGGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCC 42935 Query 24817 CGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGA 24876 || || || ||| ||||||| || || || ||||| ||||| | | | || || Sbjct 42934 TGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGA 42875 Query 24877 TTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| ||||| || ||||| || || || ||| ||||| |||| | ||||| || Sbjct 42874 TTACAACATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCGTCTTCGCGGTGG 42821 >seq204 Length=54989 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || |||||||| || || | | Sbjct 44213 ATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 44272 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| || ||||| || || || || Sbjct 44273 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGACCAG 44332 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || ||||||| ||||| || ||||| ||||| Sbjct 44333 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGA 44367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449867698680760