Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq126 219 7e-51 seq253 174 2e-37 seq164 152 8e-31 seq510 138 2e-26 seq1455 129 9e-24 seq133 100 5e-15 >seq126 Length=136461 Score = 219 bits (242), Expect = 7e-51 Identities = 248/329 (75%), Gaps = 9/329 (3%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| |||||||| | ||||| |||| || ||||||||||||||||||||| Sbjct 10861 CCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATGAGGCCGCGCTTC 10802 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC-AAA 794459 || ||||||||||||| |||||| ||||||||| |||||||| || || || || ||| Sbjct 10801 TTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCCACAGCAGCGAAA 10742 Query 794460 GCCGACGAGCCGCTC--GGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCC 794517 ||| | || ||||| || | || | || || || | |||||| | ||| Sbjct 10741 GCCAGC-AGGCGCTCCGGGTAGGAGGATACACGCGG-----GTCGCACCACTTGAGTGCC 10688 Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTC 794577 || | ||||| ||| | || | || | || || ||||| || | ||| ||||||||| Sbjct 10687 CAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGCAGGAGATGGTCCTTC 10628 Query 794578 TCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTT 794637 |||| || |||||||| ||| ||||| ||||| || |||||| ||| ||||| ||||| Sbjct 10627 TCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTAGACCTCCGAGTGAATGTTC 10568 Query 794638 TCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || |||||||||||||||||||| ||||| Sbjct 10567 TCAATGGCGATCTGGAAGCCATAGAAGCA 10539 Score = 176 bits (194), Expect = 7e-38 Identities = 230/313 (73%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||||| ||||||||||| ||| ||||||||||||||||||||| | ||| Sbjct 11182 ACGCCGGCCTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGA 11123 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCAC-CCGAG 794011 ||||||| |||||||| || ||||| | ||||| ||| ||| || || Sbjct 11122 GAGATCATGTCCATCCAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGA-CACACCAAG 11064 Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 ||| ||||| ||||| || ||||| ||||||||||||||||||||||| | |||||| Sbjct 11063 CGAGTAGAGCAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCAT 11004 Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 || || ||| |||| || ||||| || | |||||||| | ||| ||| | || || || Sbjct 11003 ACCAATCAGCTCCACAGGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTC 10944 Query 794132 GATGATGATCTGCCTGGGCACGTCGGAC-GACGGCTTGTCGACGAGCATCGTGTAGAGCA 794190 ||||||| | || |||| | | | | ||||| ||| ||| | | ||| | | Sbjct 10943 ACGAATGATCT-CGTGTACACGGCTCTCTGGCAGCTTGGTGACCAGCTTGGAGTACAAAA 10885 Query 794191 GGCAGGCAAAGTC 794203 ||||||| ||||| Sbjct 10884 GGCAGGCGAAGTC 10872 Score = 172 bits (190), Expect = 9e-37 Identities = 203/271 (75%), Gaps = 8/271 (3%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 |||||||| || || || || || ||||| ||||| |||||| |||||| ||| Sbjct 10534 GCCTCGGGCACCTGCACTTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTCACGATACCG 10475 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||| ||||| |||||||| ||||||||||| ||||| ||||||| ||| ||||| Sbjct 10474 TCACTGGCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGC 10415 Query 796270 GAGACCCAGTGGACCGT---GTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | ||||| || | |||| | ||||||| |||||| || ||||| |||||| Sbjct 10414 TTGCTCCAGT---CCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAG 10358 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATA-TCCGTTGGTAGCGGATGGGGAACAGAACAAA 796385 |||||||| || |||||||||| ||| | | || || | | ||||||||||| || || Sbjct 10357 GCCTCGGCTTTCTTGTACATCTGCCACACTTCG-TGTTCCTGAATGGGGAACAGCACGAA 10299 Query 796386 GCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 || ||||||||||| || | ||||||| Sbjct 10298 ACGGTTGGGGTTCTCAACGAGGAACGGCTCG 10268 >seq253 Length=136666 Score = 174 bits (192), Expect = 2e-37 Identities = 194/259 (75%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| |||||||| || ||||| || ||||||||| | ||||| || ||| | | Sbjct 36728 TGAACTTGGTCACGGCCTTCGTGCCCTCCGACACGGCGTGCTTAGCCAGCTCACCGGGGA 36669 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || |||||||| ||||||||||||||| || | ||| |||||| | Sbjct 36668 GCATGAGACGCACGGCAGTCTGGATCTCGCGGCTGGACAGCGTCGACTTCTTGTTGTAAC 36609 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | | ||||||| |||| |||||||||| |||||||||| Sbjct 36608 GCGACAGCTTGCCGGCCTCCGAGGCGATGCGCTCGAAAATGTCGTTGATGAACGAGTTCA 36549 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||| ||| ||||||||||||||| |||||||||| Sbjct 36548 TGATCGACATGCCGCGCTTGCTGATACCCGTGTCGGGGTGCACCTGACGCAGCACCTTGT 36489 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| ||||||||| Sbjct 36488 AGATGTAGGTCGAGTACGA 36470 >seq164 Length=163168 Score = 152 bits (168), Expect = 8e-31 Identities = 189/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || ||||| || || ||||| ||||||||| | ||||| || ||| | | Sbjct 89846 TGAACTTGGTCACAGCCTTCGTGCCTTCTGACACGGCGTGCTTAGCCAGCTCACCGGGGA 89787 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || ||||| || ||||||||||| ||| || | ||| |||||| | Sbjct 89786 GCATGAGACGCACAGCCGTCTGGATCTCACGGCTGGACAGGGTGGACTTCTTGTTGTAAC 89727 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | ||||||| |||| |||||||||| || ||||||| Sbjct 89726 GCGACAGCTTGCCGGCCTCCGAAGCGATGCGCTCGAAAATGTCGTTGATGAAGGAGTTCA 89667 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||| ||| ||||||||||||||| |||||||||| Sbjct 89666 TGATCGACATTCCACGCTTGCTGATACCCGTGTCGGGGTGCACCTGACGCAGCACCTTGT 89607 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| ||||||||| Sbjct 89606 AGATGTAGGTCGAGTACGA 89588 >seq510 Length=41021 Score = 138 bits (152), Expect = 2e-26 Identities = 213/303 (70%), Gaps = 1/303 (0%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| |||||||| |||||||||||||| || || | |||||| | || |||||| Sbjct 20283 GCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGG-ATAATGCCGTT 20225 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 || |||||| ||||| | |||| | | |||||| | |||||| | Sbjct 20224 AGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGAT 20165 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 ||||| ||||| ||| || ||||| ||||| | || || || ||||| ||||| Sbjct 20164 ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCC 20105 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 ||| || ||||| ||| ||| |||| || ||||| || || || || || | ||| Sbjct 20104 CTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGAAGACAACTGAGGACGTGGCGT 20045 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 |||||| |||||||| || || || || |||| | ||| || |||||| |||||| Sbjct 20044 GCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTA 19985 Query 2073837 GGT 2073839 || Sbjct 19984 CGT 19982 Score = 96.9 bits (106), Expect = 5e-14 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 2071878 CCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAG 2071937 |||||| ||||||| | ||||| || |||| | ||| || ||||||||||| ||| Sbjct 20414 CCACAGCGCGTAAAACAAGTCGCG-GCGCGGTGCAGCTCATTACCGTGGTTCTTACGCAG 20356 Query 2071938 GTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTT 2071997 || || | |||| | |||||||||||||||||||| |||| || || | |||||| Sbjct 20355 ATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTT 20296 Query 2071998 GCGCTTGCCGCCGCC 2072012 |||||| || ||||| Sbjct 20295 GCGCTTACCTCCGCC 20281 >seq1455 Length=23779 Score = 129 bits (142), Expect = 9e-24 Identities = 258/376 (69%), Gaps = 10/376 (3%) Strand=Plus/Minus Query 2019006 GGCAACATGCCCAACCTCTTGCTGGCGGGCCCGCCCGGCACGGGCAAGACCACGAGCATC 2019065 || |||||| | || ||| | || | ||||| || || || || || || |||||||| Sbjct 19371 GGTAACATGACGAATCTCATCCTCTCCGGCCCTCCAGGAACTGGTAAAACAACGAGCATT 19312 Query 2019066 GCGTGCCTGGCGCGCGTGCTCTTGGGCGCGGCCGC-CGACG-AGGCCGTGCTCGAACTCA 2019123 ||| |||||||||| | | | || || | || ||| | |||| ||||| || |||| Sbjct 19311 TTGTGTCTGGCGCGCGAGTTGCTCGGTGC--CAGCACGAAGCAGGCGGTGCTGGAGCTCA 19254 Query 2019124 ATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATCATCAAGCA--TCACGCTTC 2019181 ||||||| || || ||||| | ||| || || || | |||||| || ||| | Sbjct 19253 ATGCGTCCGATGATCGCGGTATCGACACGGTACGCAGTAAGATCAAGATGTTCGCGCAGC 19194 Query 2019182 GAAAAGAATCGAC-CTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACT 2019240 || | ||| || || || || ||||||||| | |||| | || |||||||||| Sbjct 19193 AGAAGGT---GACACTTCCCCCTGGACGCCACAAGATCGTCATATTGGACGAGGCCGACT 19137 Query 2019241 GCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGA 2019300 | || | || ||||||||||| || ||| || ||||| | | | | |||| Sbjct 19136 CAATGACAGCTGCAGCCCAGCAGGCTCTACGACGTACTATGGAGATCTTCTCGGCAACGA 19077 Query 2019301 CGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTT 2019360 |||| || || |||||||||||| || | | | |||| || || | ||||| || | Sbjct 19076 CGCGATTCGCATTGGCCTGCAACAACTCCACCAAGATCATTGAGCCCATTCAGAGTCGCT 19017 Query 2019361 GCGCCATCTTGCGCTT 2019376 |||||||| |||| || Sbjct 19016 GCGCCATCCTGCGTTT 19001 >seq133 Length=52418 Score = 100 bits (110), Expect = 5e-15 Identities = 286/437 (65%), Gaps = 2/437 (0%) Strand=Plus/Plus Query 118582 CGCCCAGGAGGACGCGCGTGACCGTGTTTGACCCGTTCTTGCGCACGCCGCGCATGCACA 118641 |||| || | | || |||||| ||| | | ||| |||| ||||||||||||| || Sbjct 29319 CGCCGAGTACGGAGCTCGTGACGGTGCTGGCTCCGCTCTTCTCCACGCCGCGCATGACCA 29378 Query 118642 CGCACATGTGGAGGCCCTCGAGCACGACGCCGACGCCGCGCGCGCCCGTGACCTCGCTGA 118701 |||||||| | |||| | || || | ||||| | | |||| | | | Sbjct 29379 TACACATGTGTGTGGCCTCAATGACCACAGCCACGCCCTTGGGTTCAATGACGCCCATAA 29438 Query 118702 TGCTCTCGGCGATCTGGCGCGTGAGCGCCTCCTGCACCTGGAAGCGGTCCGAGAGCATGT 118761 || | |||||||| || || |||||||||||| | || ||||| | | Sbjct 29439 TGGCATTAGCGATCTGCTTTGTCAGTCGCTCCTGCACCTGCAGACGACGCGAGAAGACCT 29498 Query 118762 CGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGCGGGCAGGTAGCCCACGT 118821 || || |||| | |||||| || || | | |||| ||| | ||| || | || Sbjct 29499 CGCTGACTCGCGCCAGCTTGCTGAGTCCCAATACTTTGCCATTGGGGATGTACCCGATGT 29558 Query 118822 GCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCAATGTCGC 118881 || | ||||| | || |||| || |||||||||||||||||| | | ||| || || | Sbjct 29559 GCACTTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATGGAGTAGAGGTCGATATCAC 29618 Query 118882 GCACGGTCACCATCTCGCCCGACGT-CTCGGCAAAGAGGGCGTCGCCGACGGCCTCGGCC 118940 |||| | ||||||||| || || ||| |||| | || ||| | | |||| Sbjct 29619 GCACAATGACCATCTCG-TCGTGGTCCTCTTCAAACACAGCCTCGTTCAATACGTCGGTT 29677 Query 118941 AGGGTCAGGCGGTGGCCGCGCGTGCGCTCCACCATGGCCTTGGCCACGCGCATGGGCGTG 119000 ||| || ||| || ||| ||| | || | ||||||||||| |||||| ||||| Sbjct 29678 AGGCTCTGGCCGTAGCCCTTGGTGTTGTACAATAAGGCCTTGGCCATGCGCATAGGCGTC 29737 Query 119001 TCCAAGAGGCCCTCGCG 119017 | | ||| || ||||| Sbjct 29738 TTGACGAGCCCTTCGCG 29754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915680806459163