Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_022976.1 Length=75894 Score E Sequences producing significant alignments: (Bits) Value seq416 100 1e-16 >seq416 Length=42957 Score = 100 bits (110), Expect = 1e-16 Identities = 323/496 (65%), Gaps = 19/496 (4%) Strand=Plus/Plus Query 66241 GCCTACATCGACGCTGAGCACTCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGAC 66300 |||| || || || |||||| | | ||| || | ||||||||||| || || ||||| Sbjct 30796 GCCTTTATTGATGCAGAGCACGCTATCGACGCCCACTACGCCAAGGCTCTGGGAGTGGAT 30855 Query 66301 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66360 | ||| |||| || ||||| ||| |||| || | || |||||||||| ||| Sbjct 30856 ATTGACGCCCTCTACGTCTCGCAGCCAGACTCTGGAGAAGAAGCTCTGGAGATCGCAGAC 30915 Query 66361 CTCCTCGTCAAGTCTGGCGAGCTGT--CCATCGTCGTCGTTGACTCTGTGGCGGCCCTGG 66418 ||| || || | | ||||| | | || || | || |||||| || |||| Sbjct 30916 ACGCTCATCCGATC--GGGTGCTGTAGACCTTGTGGTGCTGGATAGTGTGGCAGCTCTGG 30973 Query 66419 TGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCC 66478 |||| || |||||||| || || || || || ||| || | | || || ||||| | Sbjct 30974 TGCCTCGTGCCGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCTCTACAAGCGCGTC 31033 Query 66479 TCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGA 66535 | ||| ||||| || | ||||| ||||| | | |||| |||| ||| | | Sbjct 31034 TTATGAGCCAGGCACTGAGAAAGCTGACCGGGTCACTGTCCAAGTCCAATTGCACCATTA 31093 Query 66536 CGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG---CAACGTGGGCTACGGCCCGAATG 66592 ||| |||||||| | || |||| | || || | | || | | ||| | Sbjct 31094 ---TCTTCCTCAACCAGATCCGTCAGAAAGTAGGTATCATCTTTGGATCC--CCC----G 31144 Query 66593 AGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTC 66652 || || | || || | ||| ||| | | |||||| || || || ||||| |||| | Sbjct 31145 AGGTGACGTCAGGTGGTACGGCATTGCGCTACTACGCGTCGGTGCGGCTGGATATCCGCC 31204 Query 66653 GCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCG 66712 | | | || ||||||||||| ||| |||||||||| || ||| || || | Sbjct 31205 GTAAGACAGCCATCAAGGAAGGCGACCAGGTTGTCGGCAACGAGACGGTGGTCAAGGTGG 31264 Query 66713 TCAAGAACAAGCTGGC 66728 |||||||||| |||| Sbjct 31265 CCAAGAACAAGTTGGC 31280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242720270479635