Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq188 120 6e-22 seq135 120 6e-22 >seq188 Length=115905 Score = 120 bits (132), Expect = 6e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || |||||| || | ||| || ||||| || ||||| || || || ||| Sbjct 14922 TACCGCCTCGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCAC 14981 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || ||||| ||||| | | || || || || | Sbjct 14982 TCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCG 15041 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || |||||| || || || || |||| || ||| || | Sbjct 15042 GGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCA 15101 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || ||||||||||| ||||| ||||| || || |||||||| Sbjct 15102 CGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 15150 Score = 116 bits (128), Expect = 7e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || |||||| || | ||| || ||||| || ||||| || || || || Sbjct 15378 TACCGCCTCGCAGACGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGC 15437 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || ||||| ||||| | | || || || || | Sbjct 15438 TCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCG 15497 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || |||||| || || || || |||| || ||| || | Sbjct 15498 GGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCA 15557 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || ||||||||||| ||||| ||||| || || |||||||| Sbjct 15558 CGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCAT 15606 Score = 113 bits (124), Expect = 9e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | ||| || ||||| || ||||| || || || ||| Sbjct 14696 CCGCCACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCACTC 14755 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || ||||| ||||| | | || || || || || Sbjct 14756 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 14815 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || |||||| || || || || |||| || ||| || || Sbjct 14816 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 14875 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || ||||||||||| ||||| ||||| || || |||||||| Sbjct 14876 TCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 14922 Score = 111 bits (122), Expect = 3e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| | |||||| || | ||| || ||||| || ||||| || || || || Sbjct 15150 TACCGCCTCGAAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGC 15209 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || ||||| ||||| | | || || || || | Sbjct 15210 TCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCG 15269 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || |||||| || || || || |||| || ||| || | Sbjct 15270 GGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCA 15329 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || ||||||||||| ||||| ||||| || || |||||||| Sbjct 15330 CGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 15378 >seq135 Length=100430 Score = 120 bits (132), Expect = 6e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | |||||| || | ||| |||||||| || ||||| || || ||||| Sbjct 42819 TACCACCGCGAAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGC 42878 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | |||||| || || || || ||||| ||||| || | || || || || | Sbjct 42879 TCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCG 42938 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || |||||||| || |||||||| ||||| || || || |||| || || || Sbjct 42939 GAATGCCTTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCC 42997 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || |||||||| ||||||||||| || || |||||||| Sbjct 42998 ACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 43047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981760313942463