Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq135 102 2e-16 seq188 100 7e-16 seq510 93.3 1e-13 seq290 84.2 5e-11 >seq135 Length=100430 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| |||||||| || || ||||| ||| ||| ||| || | || |||||| Sbjct 42972 GTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAGCAGCGTCTGATCTTC 42913 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || || || | || || |||||||||| ||||||| |||||| Sbjct 42912 GCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGATTACAACATCCAGAAGGAGTCT 42853 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| || || | ||||| Sbjct 42852 ACTCTTCACCTGGTGCTGCGTCTTCG 42827 >seq188 Length=115905 Score = 100 bits (110), Expect = 7e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || |||||||| |||| ||||| ||| ||| | |||| || |||||| Sbjct 15354 ACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGACTCGATCGACAACGTCAAGCAA 15295 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| || ||| ||| || | | |||||||| || ||| Sbjct 15294 AAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTTTGATCTTCGCTGGCAAG 15235 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| || || | || || ||| |||||| ||||||| |||||||| || ||| Sbjct 15234 CAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCTACACTCCAC 15175 Query 206374 CTTGTTTTGAGACTTCGA 206391 || || || | |||||| Sbjct 15174 CTGGTGCTGCGTCTTCGA 15157 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || |||||||| |||| ||||| ||| ||| | |||| || |||||| Sbjct 15582 ACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGACTCGATCGACAACGTCAAGCAA 15523 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| || ||| ||| || | | |||||||| || ||| Sbjct 15522 AAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTTTGATCTTCGCTGGCAAG 15463 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| || || | || || ||| |||||| ||||||| |||||||| || ||| Sbjct 15462 CAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCTACGCTCCAC 15403 Query 206374 CTTGTTTTGAGACTTCGA 206391 || || || | || ||| Sbjct 15402 CTGGTGCTGCGTCTGCGA 15385 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || |||||||| |||| ||||| ||| ||| | |||| || |||||| Sbjct 14898 ACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGACTCGATCGACAACGTCAAGCAA 14839 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| || ||| ||| || | | |||||||| || ||| Sbjct 14838 AAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTTTGATCTTCGCTGGCAAG 14779 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| || || | || || || |||||| ||||||| |||||||| || ||| Sbjct 14778 CAGCTGGAGGACGGCCGCACGCTGAGTGACTACAACATCCAGAAGGAGTCTACACTCCAC 14719 Query 206374 CTTGT 206378 || || Sbjct 14718 CTGGT 14714 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || |||||||| |||| ||||| ||| ||| | |||| || |||||| Sbjct 15126 ACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGACTCGATCGACAACGTCAAGCAA 15067 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| || ||| ||| || | | |||||||| || ||| Sbjct 15066 AAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTTTGATCTTCGCTGGCAAG 15007 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| || || | || || || |||||| ||||||| |||||||| || ||| Sbjct 15006 CAGCTGGAGGACGGCCGCACGCTGAGTGACTACAACATCCAGAAGGAGTCTACACTCCAC 14947 Query 206374 CTTGTTTTGAGACTTCGA 206391 || || || | || ||| Sbjct 14946 CTGGTGCTGCGTCTGCGA 14929 >seq510 Length=41021 Score = 93.3 bits (102), Expect = 1e-13 Identities = 170/248 (69%), Gaps = 1/248 (0%) Strand=Plus/Minus Query 173107 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 173166 ||||||||||||| |||||||||| || ||| ||||| | | || | | Sbjct 20643 GCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAAC 20584 Query 173167 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 173226 || || | || || || | || | | ||| | |||||| || ||||| | ||||| Sbjct 20583 CACAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATAC 20524 Query 173227 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 173286 || |||| || || | || | | ||| ||||| |||||||| || ||||| || Sbjct 20523 AGAGCTTCAAACTCATCGCCCAGCACT-CGTACAGACCAGGAGCTTCGTTGGGACAGAAC 20465 Query 173287 AGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGCG 173346 | |||||| || |||| || ||| || |||||||||||||| || | ||| | |||| Sbjct 20464 AAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCG 20405 Query 173347 TAGAACAA 173354 || ||||| Sbjct 20404 TAAAACAA 20397 >seq290 Length=60535 Score = 84.2 bits (92), Expect = 5e-11 Identities = 148/215 (69%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| || ||| || || || || || || ||||| | || ||||| Sbjct 10465 AAAATG---CAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAG 10521 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || |||| | || || ||||| || ||||| || || || ||||| ||| Sbjct 10522 CCGTCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCT 10581 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| || | || ||||||||||| |||||| | || || || | ||| || | || Sbjct 10582 GACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGAC 10641 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||| ||||||| ||||| || || ||||| || Sbjct 10642 TACAACATCCAGAAGGAGTCGACCCTGCACCTGGT 10676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181740289565957