Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq126 327 2e-83 seq510 158 2e-32 seq253 152 7e-31 seq164 122 1e-21 seq1455 113 6e-19 seq133 87.8 3e-11 >seq126 Length=136461 Score = 327 bits (362), Expect = 2e-83 Identities = 442/601 (74%), Gaps = 16/601 (3%) Strand=Plus/Plus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||||||| | || || ||||| ||||| || || ||||||||||| | | || || Sbjct 10268 CGAGCCGTTCCTCGTTGAGAACCCCAACCGTTTCGTGCTGTTCCCCATTCAGGAACA-CG 10326 Query 1455775 GA-TATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 | | ||| | |||||| | |||| ||||||||||||| ||||| || |||||| ||||| Sbjct 10327 AAGTGTGGCAGATGTACAAGAAAG-CCGAGGCCTCCTTCTGGACGGCTGAGGAGCTCGAC 10385 Query 1455834 CTCGGCGCCGAC---ACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATC 1455890 || | |||| | || ||||| ||| | ||| ||||||| || |||||| Sbjct 10386 CTTGTGCACGACCTCAAGG---ACTGGAGCAAGCTCACGGACAACGAGCGACACTTCATC 10442 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950 |||||||| |||||||| || ||| ||||| || || |||||| ||||||| ||||| Sbjct 10443 AAGCACGTGCTCGCCTTCTT-CGCAGCCAGTGACGGTATCGTGAACGAGAACTTGGCCAT 10501 Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 ||| | || || || || |||| ||||| |||| || || || ||||||||||| Sbjct 10502 GAACTTCAGCAACGAAGTGCAGGTGCCCGAGGCTCGTTGCTTCTATGGCTTCCAGATCGC 10561 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 ||| || ||||| ||||| || |||||| || || || ||||| ||| |||||||| | Sbjct 10562 CATTGAGAACATTCACTCGGAGGTCTACTCACTGCTCATTGACACGTACATCAAGGACGC 10621 Query 1456071 GGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 | ||||||||||||| ||| | || ||||| || || | || | || | ||| ||||| Sbjct 10622 GATCGAGAAGGACCATCTCCTGCGTGCCATTGAGACCATCCCTTGTGTCACGAAGAAGGC 10681 Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTC 1456190 ||||||| | |||||| | || | | | || | || | ||||| || | Sbjct 10682 TCACTGGGCACTCAAGTGGTGCGAC-CCGCGTGTATCCTC-CTACCCGGAGCGCCT-GCT 10738 Query 1456191 GGCTTT-GCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCT 1456248 |||||| || || || || |||||||| ||||||||| ||||||| ||||||||||||| Sbjct 10739 GGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCTGCTCCATCTTTTGGCT 10798 Query 1456249 CAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACG 1456308 ||||||||||||||||||||||||| | |||| ||||| | |||||||| |||| Sbjct 10799 AAAGAAGCGCGGCCTCATGCCCGGTC-TGAGCTTCTCGAACGAGCTCATCAGTCGTGACG 10857 Query 1456309 A 1456309 | Sbjct 10858 A 10858 Score = 163 bits (180), Expect = 4e-34 Identities = 237/324 (73%), Gaps = 8/324 (2%) Strand=Plus/Plus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTC-GACCGAC 1456510 ||||| ||||| ||||| || | ||| | | ||| |||| ||||| | | || | | Sbjct 10864 TGCACACGGACTTCGCCTGCCTTTTGTACTCCAAGCTGGTCACCAAGCTGCCAGAGAGCC 10923 Query 1456511 GTGCCCAAGCAGATCAT-CGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTC 1456569 ||| || | ||||||| ||| || || || | ||| ||| | |||||||| | || || Sbjct 10924 GTGTACACG-AGATCATTCGT-GACGCTGTGGTGATTGAGCACGAGTTTGTGCGTGACTC 10981 Query 1456570 GCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629 ||| || |||| ||| || || |||||| | || |||||||||||||||||||| || Sbjct 10982 GCTCCCTGTGGAGCTGATTGGTATGAACTCTGCC-CTCATGTGCCAGTACATTGAGTTC- 11039 Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCC 1456689 || || ||||| |||||| |||| || || | ||| ||||| | ||||| Sbjct 11040 GTGGCTGACCGTCTGCTCTACTCGCTTGG-TGTGTCCAAGATCTACCACGCTAAGAACCC 11098 Query 1456690 GTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT 1456749 || |||||||| ||||||| ||| | ||||||||||||||||||||| || || Sbjct 11099 TTTTGACTGGATGGACATGATCTCTCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGTGT 11158 Query 1456750 -GGCGAGTACGCCAAGGCCGGCGT 1456772 ||||||||| ||||||||||||| Sbjct 11159 GGGCGAGTACTCCAAGGCCGGCGT 11182 >seq510 Length=41021 Score = 158 bits (174), Expect = 2e-32 Identities = 220/305 (72%), Gaps = 5/305 (2%) Strand=Plus/Plus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 || |||||| |||||||||| |||| ||||| || || || || ||||| || ||| Sbjct 19982 ACGTACGAGCTCATGTCGCAGAAGTTCTTCACGCACGCCACCCCTACTCTCTTCAACGCC 20041 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 |||||||| || || ||| || || ||||| || |||| ||| ||| || || || Sbjct 20042 GGCACGCCACGTCCTCAGTTGTCTTCTTGCTTCCTATTGGCTATGCAGGATGACTCTATT 20101 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 |||||||| || ||||| || ||||| ||||| ||||| || ||| ||||| ||| Sbjct 20102 GAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGGCGGTATC 20161 Query 260063 GGTTTTGCCGCA--CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCC 260120 ||| | | | | ||||| | |||||| | | |||| | ||||| |||||| Sbjct 20162 GGTAT--CAGTATGCACAACATCCGCGCCACTAACAGCTACATCCGCGGCACGAACGGCT 20219 Query 260121 AGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACC 260180 || |||||| || | |||||| | || || |||||||||||||| ||||| || |||| Sbjct 20220 CCTCTAACGGCATTAT-CCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGTGGACC 20278 Query 260181 AGTGC 260185 || || Sbjct 20279 AGGGC 20283 >seq253 Length=136666 Score = 152 bits (168), Expect = 7e-31 Identities = 208/289 (72%), Gaps = 6/289 (2%) Strand=Plus/Plus Query 724852 CGGTTGGCAAGCGCGGTCGCGGCCAGCGCAAGAAGAATTATGCCTCGTACTCGTCCTTTA 724911 |||||| |||| ||| ||| || |||||||| || ||||||||| ||| | Sbjct 36426 CGGTTGCCAAGTCCGGCAAGGGCAAGGGCAAGAAGCGAGTTGAGTCGTACTCGACCTACA 36485 Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||||||| || | | ||| | | | | | | Sbjct 36486 TCTACAAGGTGCTGCGTCAGGTGCACCCCGACACGGGT-----ATCAGCAAGCGCGGC-A 36539 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 ||||||||||||||||||| |||||||||| |||| ||||||| | | |||||||| Sbjct 36540 TGTCGATCATGAACTCGTTCATCAACGACATTTTCGAGCGCATCGCCTCGGAGGCCGGCA 36599 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||| |||| | ||||||| ||| | || |||||||||||||| ||||||| Sbjct 36600 AGCTGTCGCGTTACAACAAGAAGTCGACGCTGTCCAGCCGCGAGATCCAGACTGCCGTGC 36659 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | || || | | ||| || ||||| | ||||||||| || |||||||| Sbjct 36660 GTCTCATGCTCCCCGGTGAGCTGGCTAAGCACGCCGTGTCGGAGGGCAC 36708 >seq164 Length=163168 Score = 122 bits (134), Expect = 1e-21 Identities = 189/269 (70%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 724872 GGCCAGCGCAAGAAGAATTATGCCTCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAG 724931 ||| || |||||||| | | ||||||||| ||| |||||||||||||| ||| Sbjct 89564 GGCAAGGGCAAGAAGCGTGTCGAGTCGTACTCGACCTACATCTACAAGGTGCTGCGTCAG 89623 Query 724932 GTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTCGTTT 724991 ||||||||| || | | ||| | | | | ||||||||||||||||| || Sbjct 89624 GTGCACCCCGACACGGGT-----ATCAGCAAGCGTGGA-ATGTCGATCATGAACTCCTTC 89677 Query 724992 GTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAG 725051 |||||||||| |||| ||||||| | |||||||| ||| |||| | ||||||| Sbjct 89678 ATCAACGACATTTTCGAGCGCATCGCTTCGGAGGCCGGCAAGCTGTCGCGTTACAACAAG 89737 Query 725052 CGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAA 725111 ||| | || || ||||||||||| || ||||| || || | | ||| || Sbjct 89738 AAGTCCACCCTGTCCAGCCGTGAGATCCAGACGGCTGTGCGTCTCATGCTCCCCGGTGAG 89797 Query 725112 CTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| | ||||||||| || || ||||| Sbjct 89798 CTGGCTAAGCACGCCGTGTCAGAAGGCAC 89826 >seq1455 Length=23779 Score = 113 bits (124), Expect = 6e-19 Identities = 251/373 (67%), Gaps = 4/373 (1%) Strand=Plus/Plus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAG 332932 || ||||||||||| || || ||||| | || ||| |||| | | | || |||||||| Sbjct 19001 AAACGCAGGATGGCGCAGCGACTCTGAATGGGCTCAATGATCTTGGTGGAGTTGTTGCAG 19060 Query 332933 GCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGG 332992 |||| || || |||||||| | | ||||| || || || ||||| ||| Sbjct 19061 GCCAATGCGAATCGCGTCGTTGCCGAGAAGATCTCCATAGTACGTCGTAGAGCCTGCTGG 19120 Query 332993 GCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGC 333052 || || | || | ||||||||||||| | |||| |||||||||||| || | || Sbjct 19121 GCTGCAGCTGTCATTGAGTCGGCCTCGTCCAATATGACGATCTTGTGGCGTCCAGGGGGA 19180 Query 333053 AGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCGC 333112 || ||| | | | ||| ||||| | |||| || ||| | ||||| Sbjct 19181 AGTGTCACCTTCTGCTGCGCGAACATCTTGATCTTACTGCGTACCGTGTCGATACCGCGA 19240 Query 333113 TCGTCCGACGCGTTGAGTTCGAGCACGGCCT-CGTCG-GCGGCCGCACCCAAGAGGACGC 333170 || || ||||| ||||| || ||||| |||| | ||| || | ||||| | | ||| Sbjct 19241 TCATCGGACGCATTGAGCTCCAGCACCGCCTGCTTCGTGCTG--GCACCGAGCAACTCGC 19298 Query 333171 GCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGCCAGCAAGAGGT 333230 ||||||| ||| |||||||| || || || || || || || || | || | ||| | Sbjct 19299 GCGCCAGACACAAAATGCTCGTTGTTTTACCAGTTCCTGGAGGGCCGGAGAGGATGAGAT 19358 Query 333231 TGGGCATGTTGCC 333243 | | |||||| || Sbjct 19359 TCGTCATGTTACC 19371 >seq133 Length=52418 Score = 87.8 bits (96), Expect = 3e-11 Identities = 168/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 2133441 CGCGAGGGCCTCCTGGACACACCCATGCGCGTGGCCAAGGCCATGGTGGAGCGCACGCGC 2133500 ||||| || ||| | | || || |||||| ||||||||||| | || | ||| Sbjct 29754 CGCGAAGGGCTCGTCAAGACGCCTATGCGCATGGCCAAGGCCTTATTGTACAACACCAAG 29695 Query 2133501 GGCCATCGCATGACCCTGGCCGACGCCGTCGGCGGCGCCCTCTTTGACGAGGCGTCGGAC 2133560 ||| | || || ||| |||||| | || || | ||||| |||| ||| Sbjct 29694 GGCTACGGCCAGAGCCTAACCGACGTATTGAACGAGGCTGTGTTTGAAGAGGACCACGAC 29635 Query 2133561 GAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGCCC 2133620 |||||||| | ||||| ||||| ||| | | ||||||||||||||||||| || |||| Sbjct 29634 GAGATGGTCATTGTGCGTGATATCGACCTCTACTCCATGTGCGAGCACCACATGGTGCCG 29575 Query 2133621 TTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGCAAG 2133680 || | ||||| | ||| | || ||| | ||| ||||| | | || || |||||| Sbjct 29574 TTCACGGGCAAAGTGCACATCGGGTACATCCCCAATGGCAAAGTATTGGGACTCAGCAAG 29515 Query 2133681 ATCCCGCG 2133688 | |||| Sbjct 29514 CTGGCGCG 29507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177298365577354