Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq135 165 8e-36 seq188 159 3e-34 seq290 152 5e-32 seq204 113 5e-20 seq510 96.9 4e-15 >seq135 Length=100430 Score = 165 bits (182), Expect = 8e-36 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || || || ||||| || |||||||| |||| | |||| || Sbjct 42830 AGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGA 42889 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| || || |||| ||||||||| || ||||| |||||||| Sbjct 42890 CCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCC 42949 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || || ||| | | ||| |||| ||||||||||| ||| Sbjct 42950 TTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGGGTA 43009 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 ||||| || ||||| || || || ||||| || ||||| || Sbjct 43010 ATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCATCTT 43050 >seq188 Length=115905 Score = 159 bits (176), Expect = 3e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || |||| ||| ||||| ||||| || ||||| || ||||||||||||| Sbjct 15380 CCGCCTCGCAGACGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15439 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| ||||| || || |||||||||||||| || ||||| Sbjct 15440 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 15499 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || ||||| ||||| ||| | | ||| || | |||||| Sbjct 15500 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 15559 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || || || ||||| || || || |||||||| ||||| ||| Sbjct 15560 TCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCATCTTG 15610 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || |||| ||| ||||| || || || ||||| || ||||||||||||| Sbjct 15152 CCGCCTCGAAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15211 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| ||||| || || |||||||||||||| || ||||| Sbjct 15212 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 15271 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || ||||| ||||| ||| | | ||| || | |||||| Sbjct 15272 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 15331 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || ||||| || || || ||||| || ||||| Sbjct 15332 TCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 15378 Score = 145 bits (160), Expect = 8e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || |||| ||| ||||| || || || ||||| || ||||||||||| Sbjct 14693 TTTCCGCCACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCA 14752 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | ||| | ||| || ||||| ||||| || || |||||||||||||| || ||| Sbjct 14753 CTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGC 14812 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || |||||||| || || || || ||||| ||||| ||| | | ||| || | ||| Sbjct 14813 GGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCC 14872 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || ||||| || || || ||||| || ||||| Sbjct 14873 ACGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 14922 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || |||| ||| ||||| || || || ||||| || ||||||||||| | Sbjct 14924 CCGCCTCGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCACTC 14983 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| ||||| || || |||||||||||||| || ||||| Sbjct 14984 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 15043 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || ||||| ||||| ||| | | ||| || | |||||| Sbjct 15044 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 15103 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || ||||| || || || ||||| || ||||| Sbjct 15104 TCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 15150 >seq290 Length=60535 Score = 152 bits (168), Expect = 5e-32 Identities = 171/224 (76%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || || || ||||| || ||||||||||| | || | ||| Sbjct 10685 AGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTC--CGACAGAGTGC 10628 Query 134556 GA--GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTT 134613 | ||| |||||||| ||||| || || |||| ||||||||| || ||||| || || | Sbjct 10627 GGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCCT 10568 Query 134614 CTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATG-TGTCGGACGATTCCACGTCGAGA 134672 | || || |||||||| || ||||| ||| |||| |||| |||| ||||||||||| Sbjct 10567 CCTTGTCCTGAATTTTCTGCTTGACATTGTC-AATGCTGTCCGACGGCTCCACGTCGAGC 10509 Query 134673 GTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || ||||| || || || | || || |||||||| |||||||| Sbjct 10508 GTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 10465 >seq204 Length=54989 Score = 113 bits (124), Expect = 5e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || ||||||||||| | ||| | ||| |||||||| ||||| || || | Sbjct 44402 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 44343 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| |||||||| || ||||| || || || || || || ||||| || ||||| || Sbjct 44342 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 44283 Query 134644 CCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 | |||| |||| |||| ||||||||||| || ||||| || || || || || || || Sbjct 44282 C-AATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 44224 Query 134703 AAAATTTGCAT 134713 || || ||||| Sbjct 44223 AAGATCTGCAT 44213 >seq510 Length=41021 Score = 96.9 bits (106), Expect = 4e-15 Identities = 337/519 (65%), Gaps = 9/519 (2%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || || ||| | |||| || ||| | ||||| ||| ||||| | |||| || Sbjct 19919 CAGCAAATGATTCTGCGTGTAGCGTTAGGCATCCACAAGAGCGACATCAAGTCCGCACTG 19978 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || |||||| | | ||||| ||| || |||||||| | || || | || | Sbjct 19979 GAGACGTACGAGCTCATGTCGCAGAAGTTCTTCACGCACGCCACCCCTACTCTCTTCAAC 20038 Query 7684 GCGGGCACAAACGCG-CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || ||||| | || ||||| ||||| || || || | | | |||| || ||| Sbjct 20039 GCCGGCACGC-CACGTCCTCAGTTGTCTTCTTGCTTCCTATTGGCTATGCAGGATGACTC 20097 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG 7802 || || ||||||||| |||| || | |||||| ||| || |||| | ||||| Sbjct 20098 TATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGGCGG 20157 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862 || ||| | | | || || | ||||||| ||| |||| ||| ||||| Sbjct 20158 TATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGCTACATCCGCGGCACGAACGG 20217 Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922 | | ||| | | ||||||||||| ||||| || || ||| || |||| || Sbjct 20218 CTCCTCTAACGGCATT-ATCCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGTGGA 20276 Query 7923 CCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979 |||||| ||| |||||||| ||| | || ||||| ||||||||||||||||| || Sbjct 20277 CCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGCCGA 20336 Query 7980 CATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCG-CGCG 8038 | | | || | || |||||||| ||| ||| || | ||| ||| |||| Sbjct 20337 CGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGA--GCTGCACCGCGCCGCG 20394 Query 8039 ATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGA 8077 | | || | || |||||||||| ||||| || |||| Sbjct 20395 ACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGA 20433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505364809958840