Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq65 127 3e-24 >seq65 Length=139763 Score = 127 bits (140), Expect = 3e-24 Identities = 277/411 (67%), Gaps = 3/411 (1%) Strand=Plus/Minus Query 161313 TCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAGAAA 161372 ||||||| || || || || ||||| ||||| ||||||| ||||||||| | || | Sbjct 127105 TCTACCAAGCGTCTACAAGCGAGTTATATGGTAAAGTACAAGCCACACCACAGGATGAGA 127046 Query 161373 CAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGATTG 161432 ||||| ||| | ||||| || || ||||| || || || | | || ||||||| || Sbjct 127045 ACACACCATTCCATCCACGTTCACCCTATGGGGTGGCAAAGCAATTTGCCTATTGGAGTG 126986 Query 161433 TAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAACCATG 161492 || ||| | | || |||||| ||| ||||| || || |||||||||||||| | Sbjct 126985 TAGTTAACCATCGCGAAGCTTATGGTATGTACGCCGTTAACGGGATTCTATTCAACCACG 126926 Query 161493 AGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTATCCCGTA 161552 || || ||||| || ||||| || || ||||| || ||| | | | |||| Sbjct 126925 AGAGTCCTCGACGCGGACCAACTTT-GTCACGCGTAAAATCACTCGAGCCGTGGTGCGTA 126867 Query 161553 TTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGACGAGATTGGG 161612 || | ||| | || || || | |||| || || || | || || |||| Sbjct 126866 TTCACGCTGGAATCGAGAGCTGCCTGTTTATAGGCAACCTCGACGCCCAGCGCGACTGGG 126807 Query 161613 GTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGAAACTCCTGATG 161672 | || ||| |||||| ||||| ||||||| ||| |||| || || ||||| || | Sbjct 126806 GCCACGCTCGAGACTACGTGGAATGTATGTGGCGAATGCTACAGCACGACACTCCCGAGG 126747 Query 161673 ACTATGTGATTGCCACAGGTAAAGAGT-ATTCAGTGAAGGACTTTGTAGAG 161722 | | ||| ||||||| || | || || || ||| || ||||||||| Sbjct 126746 ATTTCGTGGTTGCCACTGG-AGAGTGTCATAGTGTGCGTGAGTTTGTAGAG 126697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729881087053960