Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq126 116 5e-21 >seq126 Length=136461 Score = 116 bits (128), Expect = 5e-21 Identities = 364/556 (65%), Gaps = 11/556 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || | |||||| || | ||| || | ||||| || || | || Sbjct 10883 GCAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAG 10824 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || ||||| || |||||||| |||| |||| ||||| || || |||| Sbjct 10823 ACCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGG-AGCAGAAAGAGCCCGAGAAGA 10765 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA---TTAT 39791 |||||||||| || || || || || | || | ||| ||| | || | Sbjct 10764 AGATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGT 10705 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 |||||| ||||||| | ||| |||||| | |||||||| || || || || ||| Sbjct 10704 CGCACCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCAC 10645 Query 39852 TAAAGAGATAATGTTTTTC-ATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910 | ||||| | || || ||| | || || | || || || || | ||| || Sbjct 10644 GCAGGAGATGGTCCTTCTCGATCGC-GTCCTTGATGTACGTGTCAATGAGCAGTGAGTAG 10586 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 39970 | || || || ||||| ||||| || ||||| || || || || || | || || | Sbjct 10585 ACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGGC 10526 Query 39971 ATTTGTACCTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | || || || || || || | ||||| || || ||||| || || ||||| | Sbjct 10525 ACCTGCACTTCGTTGCTGAAGTTCAT--GGCCAAGTTCTCGTTCACGATACCGTCACTGG 10468 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCC 40088 | || || || || | || || || || || | | || | | || | || ||| Sbjct 10467 CTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTCC 10408 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 |||| |||| || | | || | || ||||| ||||| || || ||||| || | Sbjct 10407 AGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCTT 10348 Query 40149 TTTTGTACATGTTCCA 40164 | |||||||| | ||| Sbjct 10347 TCTTGTACATCTGCCA 10332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686863146323880