Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq111 95.1 1e-14 >seq111 Length=87890 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 41003 CCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACC 41062 |||||| || | ||| ||||||||||| | || | | |||||| |||| || Sbjct 66138 CCGACGGATTGTGCTGTCGGCGTGGAACCCGGCCGATCTCAACGAGATGGCCCTGCCGCC 66197 Query 41063 TTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCA 41122 ||| || |||| || ||||| |||||| ||| || ||| | || ||||| |||| || Sbjct 66198 TTGCCACATGTTCTGCCAGTTCTACGTTGCCAACGGGGAATTATCGTGTCAGATGTACCA 66257 Query 41123 AAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCAC 41182 |||| | |||||||| || || || || || ||||| || || || || ||||| || Sbjct 66258 GCGATCGGCCGACATGGGTCTTGGAGTGCCTTTCAACATTGCCAGCTACGCGCTGCTGAC 66317 Query 41183 GTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCA--CACGTTA 41237 || ||||||| || || |||||||||| || ||||| ||||||| Sbjct 66318 ACGACTGGTTGCACAAGTGACGGGACTAAAACCTGGCGA----GTTCATCCACGTTA 66370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397430244478585