Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq126 111 5e-19 seq510 91.5 5e-13 >seq126 Length=136461 Score = 111 bits (122), Expect = 5e-19 Identities = 309/455 (68%), Gaps = 23/455 (5%) Strand=Plus/Plus Query 443433 GCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCT---AC 443489 |||||||| ||| | || ||||||||||| ||||| ||| | | ||| || Sbjct 10455 GCCTTCTTCGCAGCCAGTGACGGTATCGTGAACGAGAACTTGGCCATGAACTTCAGCAAC 10514 Query 443490 GAAATGGTAGTGTACACCGAGGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAAC 443549 ||| || ||| ||||||| || | |||||| | ||||| ||| || |||||| Sbjct 10515 GAAGTGCAGGTGC---CCGAGGCTCGTTGCTTCTATGGCTTCCAGATCGCCATTGAGAAC 10571 Query 443550 ATTCACGCCGAGGTCTACAGTCAGTTGATCAA-GACAC-TAATTCCGAACGAAGACGAAC 443607 |||||| | ||||||||| ||| | | ||| ||||| || || || || | ||| | Sbjct 10572 ATTCACTCGGAGGTCTAC--TCACT-GCTCATTGACACGTACATC--AAGGACG-CGATC 10625 Query 443608 -AGC-GGTCCATCTTCT-CAT--CGTTCATGACCACGCCAGGCATCACTGAAAAGACTCG 443662 || || |||||| || | | | || | ||||| || | |||| | ||| ||| Sbjct 10626 GAGAAGGACCATCTCCTGCGTGCCATTGA-GACCATCCCTTGTGTCACGAAGAAGGCTCA 10684 Query 443663 CTGGGCAAAACAGTGGCTCGAAC-GAGAAAATCTCAGCTTCGTCGAGCGACTAGTCGCTT 443721 ||||||| ||||| ||| | | | ||| | || | ||||| || | |||| Sbjct 10685 CTGGGCACTCAAGTGGTGCGACCCGCGTGTATC-CTCCTACCCGGAGCGCCTGCTGGCTT 10743 Query 443722 TTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAA 443781 | |||| || ||||| | || || ||| |||| ||||||||| ||| | || Sbjct 10744 TCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCT-CTTTCTGCTCCATCTTTTGGCTAAAG 10802 Query 443782 AAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGT 443841 ||||| || || |||| |||||||| ||| ||||| || |||||||| |||||||| Sbjct 10803 AAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGC 10862 Query 443842 TTGCATTGCGACTTCGCCTGTCTTCTCTACACCAA 443876 |||| ||||||||||| ||| | ||| |||| Sbjct 10863 ATGCACACGGACTTCGCCTGCCTTTTGTACTCCAA 10897 >seq510 Length=41021 Score = 91.5 bits (100), Expect = 5e-13 Identities = 88/112 (79%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 ||||||||| ||| || | |||||||| ||| || ||||||||| || || || || || Sbjct 20227 CGGCATTATCCCA-TGTTGCGTGTGTTTAACGACACGGCTCGCTATGTGGACCAGGGCGG 20285 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGAC 255082 || || ||| || ||||| | |||||| |||||||||||||||||||| Sbjct 20286 AGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGCCGAC 20337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588227796099065