Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq510 219 5e-52 seq126 111 2e-19 seq101 104 3e-17 seq34 100 3e-16 >seq510 Length=41021 Score = 219 bits (242), Expect = 5e-52 Identities = 1076/1677 (64%), Gaps = 48/1677 (3%) Strand=Plus/Plus Query 104283 TGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 ||||||| ||||| ||||| || | || | |||| ||||| || || || |||||| Sbjct 19977 TGGAGACGTACGAGCTCATGTCGCAGAAGT-TCTTCACGCACGCCACCCCTACTCTCTTC 20035 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || || || ||| | || || |||| ||||||||| | || | |||| ||| Sbjct 20036 AACGCCGGCACGCCACGTCCTCAGTTGTCTTCTTGCTTCCTATTGGCTATGCAGGATGAC 20095 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || || | || || || | || || | | | || || ||||| || ||||| || Sbjct 20096 TCTATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGGC 20155 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAAA 104520 ||||| || || || || | | | |||| ||| | || || || || || || Sbjct 20156 GGTATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGCTAC-ATCCGCGGCACGAA 20214 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 || || | || ||||| ||| || | || || ||||||| ||| || |||||||| Sbjct 20215 CGGCTCCTCTAACGGCATTATCCCA-TGTTGCGTGTGTTTAACGACACGGCTCGCTATGT 20273 Query 104581 AAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 104637 | || | || || || ||||| || |||| |||| | ||||| |||||||| Sbjct 20274 GGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGC 20333 Query 104638 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCG 104697 || | | |||||||| || ||||| ||||| ||| | ||| | | | | |||| Sbjct 20334 CGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGAGCTG-CACCGCGCCG 20392 Query 104698 CGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGG 104757 ||| | || | ||| || ||| | || |||||||||||||||||||| |||| | ||| Sbjct 20393 CGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAGGCCAATGG 20452 Query 104758 CAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGG 104816 ||| ||| | | || ||||| || | || |||||||| | ||| ||| |||| || | Sbjct 20453 CAAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCTGGTCTGTACGAGTGC--TGGGCGATG 20510 Query 104817 AGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAG 104876 |||||||||| || || |||||||||| | ||||| || ||| | ||| | | Sbjct 20511 AGTTTGAAGCTCTGTATGAAAAGTACGAGAAGGAAGGACGTGCGCGTAAGACAATCAACG 20570 Query 104877 CTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGC 104936 || | ||||| ||||| || | |||| | ||||| || || | ||||| Sbjct 20571 CTCAGCAGCTGTGGTTCGCTATCCTAGACGCTCAGATTGAGACGGGAGTGCCCTTCATGC 20630 Query 104937 TTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTT 104996 | ||||| ||||| ||||| ||| || || |||| || ||| |||| ||| Sbjct 20631 TCTACAAGGACGCAGCTAACCGCAAGTCGAACCAGCAGAACTT-GGTACGATC---CGTT 20686 Query 104997 C---CAATCTCTGTACAGAAATCTTGGAATTTACAGACA-AAGATGAGACGGCTGTGTGT 105052 | ||| | || ||| || |||| | || | || |||||| ||| ||||| Sbjct 20687 CCAGCAACTTATGCTGCGAAGTCATGGAGTACAC-GTCACCCGATGAGGTGGCAGTGTGC 20745 Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTAT 105112 ||| | || || | || || || | || |||||| | || | || || || Sbjct 20746 AACTTGGCGTCTGTGGCGCTGCCTATGTTTGTGGA-----AAACGGTG-TGTTCGACTAC 20799 Query 105113 GAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGA 105172 | | ||| | || || || |||| ||||| |||| || || || Sbjct 20800 AAGAGACTGTATGAGGTGGTCAAGGTGATCACGCGCAACCTCAACAAGGTCATCGACGTC 20859 Query 105173 AATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCT 105231 || | ||| || |||| ||| ||||| || || || ||| | || ||||| |||||| | Sbjct 20860 AACTATTATCCTGTTGCAGA-GGCTCGCAAGTCCAACATGCGCCATCGTCCCATTGGTAT 20918 Query 105232 CGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGA 105291 || || |||||||| ||||||| ||||| || | |||| || || | | Sbjct 20919 TGGCGTCCAGGGTCTGGCGGATGCGTTCATCCTCATGAACTACGCGTTCGAGAGCCCGCA 20978 Query 105292 AGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAG 105351 ||| ||| | || | ||| || ||||| || || || || | ||| || Sbjct 20979 AGCTCGTGAATTGAACAAGAACATCTTCGAGACGATCTACTTTGCTGCCATGGAGACGTC 21038 Query 105352 TTCAGAG-TTGGCA-GAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA 105409 ||| ||| || | ||| ||||| || || || || |||| ||||| || || Sbjct 21039 GATGGAGATTGCCACGGAATTG--GGTCCTTACGAGACGTTCCAGGGCTCTCCGGC--CA 21094 Query 105410 -CAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGAGACC--AAGCTTCACTACG--AC 105463 ||||| ||| || || || ||||||| || | ||| | || || | || Sbjct 21095 GTAAGGGTATCTTCCAGTTCGACATGTGGG-GCGTCACACCTTCATCTGGGCTTTGGAAC 21153 Query 105464 TGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCT 105523 |||| || || || || | ||| | | ||||| |||||| || || | || Sbjct 21154 TGGGCCGCACTAAAAGATGACGTCATTAAACACGGTCTCCGTAACTCGCTGCTGGTTGCA 21213 Query 105524 CCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTAC 105583 || ||||| ||||||||||| || || ||| |||| || || || | | || || ||| Sbjct 21214 CCCATGCCGACAGCCTCCACGGCTCAGATCCTGGGCAACAACGAGTCTATCGAGCCTTAC 21273 Query 105584 ACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT 105643 ||| | ||||| || | | | || || ||||| ||| || |||||| || Sbjct 21274 ACGTCCAACATGTACAACCGTCGTGTGTTGGCTGGTGAGTTCACGATCGTTAACAAGTAT 21333 Query 105644 CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGA--TATGAAGGATCTCATGG 105701 || || | || || | ||| | || | ||| | ||| || | | ||| || Sbjct 21334 CTGATGAAGGAGCTTATCGAGCTCGGCATTTGGACGCCGGAAGTACGTA--ATCAGATTC 21391 Query 105702 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGT 105761 |||| | ||||| || | || || | ||| ||||| |||| ||||| || || Sbjct 21392 TGAATGATGGTGGCTCGGTGCAGAAGGTCAAGGACATTCCGGATGATGTTAAGGAGAAGT 21451 Query 105762 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 105821 || || || ||||| |||||| ||||| ||| | ||| || | || || ||||| | Sbjct 21452 ACAAGACGGTGTGGGAGATCAAGCAGAAGGCTGTTCTGGACCTGTCGGCTGACCGTGG-C 21510 Query 105822 GCTT-CATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAG 105880 |||| || || ||||| |||| || ||| | || || || ||| Sbjct 21511 GCTTATATCTGCCAGAGTCAGTCGTTGAACATCCACATCGCCGACCCGACTATCAGTAAG 21570 Query 105881 CTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 105937 || | || |||||| | ||| |||||||||||| ||||| || || ||||| ||| Sbjct 21571 CTGACGTCCATGCACTTTTACGCTTGGAAGAAGGGACTCAAGACCGGCATGTACTAC 21627 >seq126 Length=136461 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 ||||| || | || || || ||| || || ||||||||||| || || |||||| | Sbjct 10728 GAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCTGCTCC 10787 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 || | |||||| |||||||| || |||||||| ||||| ||||||| |||||||| ||| Sbjct 10788 ATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACGAGCTCATC 10847 Query 94924 TCTCGTGACGAGGG 94937 |||||||||||| Sbjct 10848 AGTCGTGACGAGGG 10861 >seq101 Length=123959 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 169313 AGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCG 169372 ||||||| ||| | |||||| || ||||| | || ||||| ||||||||||||||| Sbjct 87951 AGCTGTGCGACCGTGGCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCG 87892 Query 169373 TAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCC 169432 || || || || |||||||||| || || || ||||| |||| |||||| || |||||| Sbjct 87891 TACTGGTCGCGTCCAACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCC 87832 Query 169433 TCGGT 169437 || || Sbjct 87831 TCCGT 87827 >seq34 Length=72074 Score = 100 bits (110), Expect = 3e-16 Identities = 137/188 (73%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG--CGACTTCAAAGA 9761 || ||||||||||| ||||||| |||||| ||| | || ||| | ||||| | |||| Sbjct 28947 GCGTCAATCTCATCGATGAAGATGATGCACGGT-GCCTTCCGCTTGGCCGACT-CGAAGA 29004 Query 9762 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821 | || || || || |||||||||||| || ||||||| | || | || | ||| Sbjct 29005 GGTCACGCACGCGACGGGCGCCCACACCTACGTACATCTCTTCGAACTCTGATCCAGAAG 29064 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | | || ||| ||||| || ||||| || || || || ||||| || |||||||||| Sbjct 29065 AATAGAAGAACGGGACGCCAGCCTCACCAGCGATAGCACGAGCGAGTAGCGTCTTACCCG 29124 Query 9882 TACCTGGC 9889 |||| ||| Sbjct 29125 TACCAGGC 29132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583222035029080