Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq510 242 4e-59 seq101 114 1e-20 seq601 100 3e-16 seq65 100 3e-16 >seq510 Length=41021 Score = 242 bits (268), Expect = 4e-59 Identities = 342/472 (72%), Gaps = 10/472 (2%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||||||||| | ||| || |||| ||| ||||||||||| || || || |||||| Sbjct 19979 GAGACGTACGAGCTCATGTCGCAGAAGTTCTTCACGCACGCCACCCCTACTCTCTTCAAC 20038 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || || ||| | |||||| |||| |||||||| |||| ||| |||||||||| Sbjct 20039 GCCGGCACGCCACGTCCTCAGTTGTCTTCTTGCTTCCTATTGGCTATGCAGGATGACTCT 20098 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || || ||||| ||||| || || ||| | || ||| ||||| || ||| |||| ||| Sbjct 20099 ATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGTATCTCTAAATGGGCGGGCGGT 20158 Query 53423 ATCGGTATC-CACTGCTCGAACGTCCGTG---CGAACGGCACACCAATCAAGGGGACGAA 53478 ||||||||| ||| | ||| |||| | | ||| || || ||| || ||||| Sbjct 20159 ATCGGTATCAGTATGCAC-AACATCCGCGCCACTAACAGC-TAC--ATCCGCGGCACGAA 20214 Query 53479 CGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGT 53538 |||| | | | || || | || ||| | || || || ||| ||||||| || || || Sbjct 20215 CGGCTCCTCTAACGGCATTAT-CCCATGTTGCGTGTGTTTAACGACACGGCTCGCTATGT 20273 Query 53539 CAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGC 53598 ||||||| || || ||||||||||| |||||||| |||||| | |||||||||||||| Sbjct 20274 GGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTACTTGGAGCCGTGGCACGC 20333 Query 53599 CGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCG 53658 |||| | | ||||| || || |||||| ||| || ||| | || | ||| |||| Sbjct 20334 CGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAATGAGCTGCACCGC-GCCG 20392 Query 53659 TGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710 ||| ||||| || |||||| | || || ||||||||| | | |||||| Sbjct 20393 CGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAGAGAGTGGAG 20444 Score = 167 bits (184), Expect = 3e-36 Identities = 534/814 (66%), Gaps = 37/814 (5%) Strand=Plus/Plus Query 55133 ACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAG 55192 || || ||||| ||| |||||||||| || || || || || || ||| |||||| Sbjct 20830 ACGCGCAACCTCAACAAGGTCATCGACGTCAACTATTATCCTGTTGCAGAGGCTCGCAAG 20889 Query 55193 TCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATG 55252 |||||| | || || || ||||| | || || || ||||| |||| || ||||| Sbjct 20890 TCCAACATGCGCCATCGTCCCATTGGTATTGGCGTCCAGGGTCTGGCGGATGCGTTCATC 20949 Query 55253 ATGCTCGGATTGCCC-TTCGA---CTCGGAACCTGCTCGAGAAATTAACCAGGACATCTT 55308 | | | | | | | ||||| | || || ||||| ||| | ||| || ||||||| Sbjct 20950 CTCAT-GAACTACGCGTTCGAGAGCCCGCAA---GCTCGTGAATTGAACAAGAACATCTT 21005 Query 55309 C-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGA 55367 | || || ||||||||||| || | ||| |||| | | || | | ||| Sbjct 21006 CGAGACG-ATCTACTTTGCTGCCATGGAGACGTCGATGGAGATTGCCACGGAATTGGGTC 21064 Query 55368 CCTACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGG 55427 | ||||||||||||| | || || || ||||| | |||||||||| | |||| Sbjct 21065 CTTACGAGACGTTCCAGGGCTCTCCGGCCAGTAAGGGTATCTTCCAGTTCGACATGTGGG 21124 Query 55428 GCAAGTCTGACCC-CATGT-----TTG--ACAAGT------TGAAGCATGACATTCACTT 55473 || ||| ||| ||| | ||| || | | || ||||| | || | Sbjct 21125 GC--GTCACACCTTCATCTGGGCTTTGGAACTGGGCCGCACTAAAAGATGACGT-CATTA 21181 Query 55474 GTGG-GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGA 55532 || || || ||||| ||||| || || || ||||| || || || |||||||||| Sbjct 21182 AACACGGTCTCCGTAACTCGCTGCTGGTTGCACCCATGCCGACAGCCTCCACGGCTCAGA 21241 Query 55533 TCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCC 55592 || |||||||||||||| | ||||||| |||||| ||||||| ||| || || Sbjct 21242 TCCTGGGCAACAACGAGTCTATCGAGCCTTACACGTCCAACATGTACAACCGTCGTGTGT 21301 Query 55593 TAGCAGGTGAGTTTGTCATGATC---AACAAGCACCTCGTCAAGGACCTGCAGAAGATCA 55649 | || |||||||| || |||| |||||| | || | ||||| || || || Sbjct 21302 TGGCTGGTGAGTT---CACGATCGTTAACAAGTATCTGATGAAGGAGCTTATCGAGCTCG 21358 Query 55650 ACAAGTGGAACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATC 55709 || |||| ||| | | | | ||| || | || || || || ||||| Sbjct 21359 GCATTTGGACGCCGGAAGTACGTAATCAGATTCTGAATGATGGTGGCTCGGTGCAGAAGG 21418 Query 55710 T---GGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGA 55766 | ||| ||||| | | ||||||| ||| ||||||||||||||| |||| Sbjct 21419 TCAAGGACATTCCGGATGATGTTAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGA 21478 Query 55767 AGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGA 55826 || | | | ||| || ||||| ||||| || || ||| |||| ||||| ||| Sbjct 21479 AGGCTGTTCTGGACCTGTCGGCTGACCGTGGCGCTTATATCTGCCAGAGTCAGTCGTTGA 21538 Query 55827 ACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGA 55886 ||||| ||| | | || | | ||| ||| || ||||||||||||| |||| Sbjct 21539 ACATCCACATCGCCGACCCGACTATCAGTAAGCTGACGTCCATGCACTTTTACGCTTGGA 21598 Query 55887 AGAAGGGACTCAAGACGGGTATGTACTATCTGCG 55920 |||||||||||||||| || |||||||| |||| Sbjct 21599 AGAAGGGACTCAAGACCGGCATGTACTACATGCG 21632 >seq101 Length=123959 Score = 114 bits (126), Expect = 1e-20 Identities = 189/273 (69%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 ||||||||| ||||| | || || || ||||| |||||| ||| || || ||||| || Sbjct 88875 CGTGAAGATATATCGAGGACTAGCAGCGTCCTTACCACCTTGCAGTCGAGTACCAAATTG 88816 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || || || | || || ||||| |||| |||||||| | ||| |||| || || Sbjct 88815 ACCTGACGGGTACAGTAGCGGCAGGTTATTGGACCCCACGAAGTCCTGCGCCATGTTGAC 88756 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 |||||| || | ||||| ||||||||||| || || ||||| | ||| || Sbjct 88755 AATCGTCGAGTGTAACGAGGCTTCTCCGTGGTGATAAGCTGTGTGCTCACTGCAGTAACC 88696 Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCAC 152267 |||| ||| |||||||||| || |||| || || || | ||| ||| | | || Sbjct 88695 AGCCAGCTGAGCCACCTTCACTTCACTCGTAAGCTTGCGTTTTAAACAAGCGAACAGAAC 88636 Query 152268 CTTGCGCTGGGATGGTTTCAAACCGTCCACCAC 152300 ||| ||||| || || | ||| || ||||| Sbjct 88635 CTTCCGCTGCGAGATCTTGAGACCATCGACCAC 88603 Score = 102 bits (112), Expect = 9e-17 Identities = 147/204 (72%), Gaps = 10/204 (5%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| || || |||| || ||||| ||||| ||||| || || ||||| ||||| Sbjct 88874 GTGAAGATATATCGAGGACTAGCAGCGTCCTTACCACCTTGCAGTCGAGTACCAAATTGA 88815 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || ||| | || || |||||| |||| ||||| |||| || |||| ||||||| Sbjct 88814 CCTGACGGGTACAGTAGCGGCAGGTTATTGGACCCCACGAAGTCCTGCGCCATGTTGACA 88755 Query 117425 ATCGTACCTTG----GAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTC-CGCCACGT 117479 ||||| || |||||| || || |||||||| || || ||||| | || || Sbjct 88754 ATCGTCGAGTGTAACGAGGCT----TCTCCGTGGTGATAAGCTGTGTGCTCACTGCA-GT 88700 Query 117480 AGCCCGCCAGCTGAGCCACCTTCA 117503 | || ||||||||||||||||||| Sbjct 88699 AACCAGCCAGCTGAGCCACCTTCA 88676 >seq601 Length=25350 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 117297 CTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTAC 117356 ||||| |||||||| ||||||| || || | || || ||||| |||||||||| Sbjct 13454 CTAGGTTGGTGAAAATATAACGAGCACTGGCCGAGTCTTTACCACCCATCAGACGCGTAC 13513 Query 117357 CGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCA 117416 |||| || ||| |||| || |||| | ||||||| ||| || |||| || |||| Sbjct 13514 CGAACTGACCAATCGGGGACAGTAGGTGGATGTTGTTGCTGCCAACGAAGTCCTGCGCCA 13573 Query 117417 AGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCA 117476 || || || || || || || |||||| || || || || | ||||| | || Sbjct 13574 TATTCACGATACAGCCCTGTAGACTTTGCTCACCGTGATGGTAGGCAGAGTGCTCAGACA 13633 Query 117477 CGTAGCCCGCCAGCTGAGCCACCTT 117501 ||||||| |||| ||| |||||||| Sbjct 13634 CGTAGCCAGCCAACTGTGCCACCTT 13658 >seq65 Length=139763 Score = 100 bits (110), Expect = 3e-16 Identities = 249/369 (67%), Gaps = 18/369 (5%) Strand=Plus/Plus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 ||| | ||| | ||||||||| | || || ||| || ||| ||| ||||||||| || Sbjct 126691 CGCGAGCTCTACAAACTCACGCACACTATGACACTCTCCAGTGGCAACCACGAAATCCTC 126750 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 |||| | ||||| | ||| ||||||| || |||||||| ||||| ||||| Sbjct 126751 GGGAGTGTCGTGCTGTAGCATTCGCCACATACATTCCACGTAGTCTCGAGCGTGGCCCCA 126810 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGCTTGGCCGTCTTG-TTCC------ 124653 |||||||| ||| || ||||| || | | | ||| || ||| | |||| Sbjct 126811 GTCGCGCTGGGCGTCGAGGTTGCCTA--TAAACAGGC--AGC--TCTCGATTCCAGCGTG 126864 Query 124654 ACTCCG--CCAAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGA 124711 | | || ||| | | || || || ||||| ||||| | || |||||||| | Sbjct 126865 AATACGCACCACGGCTCGAGTGATTTTACGCGTGACAAAGTTGG-TCCGCGTCGAGGACT 126923 Query 124712 CTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTT 124771 |||||||||||| ||||| || || || |||| || || | ||||| | | || Sbjct 126924 CTCGTGGTTGAATAGAATCCCGTTAACGGCGTACATACCATAAGCTTCGCGAT-GGTTAA 126982 Query 124772 CGTCA-TCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGG 124830 | || ||||||| |||| |||| | ||| |||||||| || || | |||||| | Sbjct 126983 CTACACTCCAATAGGCAAATTGCTTTGCCACCCCATAGGGTGAACGTGGATGGAATGGTG 127042 Query 124831 TGTTTTCAT 124839 |||| |||| Sbjct 127043 TGTTCTCAT 127051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547179630656600