Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq111 149 5e-31 >seq111 Length=87890 Score = 149 bits (164), Expect = 5e-31 Identities = 445/677 (66%), Gaps = 26/677 (4%) Strand=Plus/Minus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| || |||||||| | | |||||| ||||| ||||| | | |||| Sbjct 66421 AGCTGCTTCTGAAGGGGTTCCACATGGTTCAGGTACACGTGTGCGTCGCG-ATAACGTGG 66363 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG--AGGAGAGAGT 29981 | ||||| || |||| ||| || || || || || | || || |||| || || | || Sbjct 66362 ATGAACTCGCCAGGTTTTAGTCCCGTCACTTGTGCAACCA-GT-CGTGTCAGCAGCGCGT 66305 Query 29982 AGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGAC 30041 ||||||| ||||| || || || || || |||||||| |||| | |||||| | ||||| Sbjct 66304 AGCTGGCAATGTTGAAAGGCACTCCAAGACCCATGTCGGCCGATCGCTGGTACATCTGAC 66245 Query 30042 ACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCA 30101 |||| | || |||| | ||||| ||||| || | |||||| || || || |||| Sbjct 66244 ACGATAATTCCCCGTTGGCAACGTAGAACTGGCAGAACATGTGGCAAGGCGGCAGGGCCA 66185 Query 30102 TGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30161 | | | || |||||||| || ||| | || || | ||| || || Sbjct 66184 TCTCGTTGAGATCGGCCGGGTTCCACGCCGACAGCACAATCCGTCGGTCAGTAGGATTCG 66125 Query 30162 TCCTGA---TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCT 30217 | | | || | ||| | ||| ||||| ||||| || || | ||||||| Sbjct 66124 TACGCAGCTTGTGAATCACCTC----TGCTAGCTGGTCCACACCTTGGCCAGTGTAGTCT 66069 Query 30218 GCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCC 30277 || |||||||||||||| || || || || | ||||||||| ||||| |||||||| Sbjct 66068 GCATGCATGTCCGTGTACTTGGCACCAAAGTGACGCCACTGGAAGCCGTAAACCGGTCCA 66009 Query 30278 AGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTG 30337 |||||||| | |||| | || | || | | |||| | | || | || || ||| Sbjct 66008 AGGTCTCCAACCTCCCGATCCTGCAGTCCTCGGCTATCCAGATACTCGCGCGATCCATTG 65949 Query 30338 GCGTCCCAGATCTTTACCCCCTTCT----CAGAGAGCTCTTTGGAGTTTGTGGACCCTCT 30393 ||||||| || | | | |||| ||||| | | || ||||| || || Sbjct 65948 CCGTCCCAAATATGAATATCTTTCTGCTGCAGAGTG----TGGGCACTTGTGTCTCCACT 65893 Query 30394 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG 30453 | |||||||| |||||||| | || | ||| || |||| |||||||| || | Sbjct 65892 AATAAACCACAGTAGCTCCTCGGCTACACCTCGCCAGAACACCCGTTTGGTCGTCAGCAA 65833 Query 30454 GGGAA----ACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTC 30509 |||| | ||| ||| || | | |||| ||| | ||||| || ||||| | Sbjct 65832 TGGAAAGACATTGT-TCTTCAGACTGAACCTCATCTGCGCTCCAAAGACCGACAACGTGC 65774 Query 30510 CCGTGCCCGTCCTGTCT 30526 |||| || || | |||| Sbjct 65773 CCGTTCCAGTACGGTCT 65757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406284070705164