Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq111 190 2e-43 >seq111 Length=87890 Score = 190 bits (210), Expect = 2e-43 Identities = 343/497 (69%), Gaps = 12/497 (2%) Strand=Plus/Plus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 ||||| |||||||||| ||||| |||| |||| || || | ||||||||| |||||| Sbjct 65827 TTTCCATTGCTGACGACCAAACGGGTGTTCTGGCGAGGTGTAGCCGAGGAGCTACTGTGG 65886 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGA-----AGATCT 34334 || | || || | ||| | || | | ||| | | | | || | || | Sbjct 65887 TTTATTAGTGGAGACACAAGTGCCCA----CACTC-TGCAGCAGAAAGATATTCATATTT 65941 Query 34335 GGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGG 34394 |||||| | || || || || | |||||| | || || | | |||||||| | Sbjct 65942 GGGACGGCAATGGATCGCGCGAGTATCTGGATAGCCGAGGACTGCAGGATCGGGAGGTTG 66001 Query 34395 GCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGA 34454 | ||| | || ||||| ||||| ||||||||| | |||||||| || |||| || | Sbjct 66002 GAGACCTTGGACCGGTTTACGGCTTCCAGTGGCGTCACTTTGGTGCCAAGTACACGGACA 66061 Query 34455 GCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTTG 34513 | || ||||| | || || || | ||||||||| |||| | ||||| ||| || Sbjct 66062 TGCATGCAGACTACACTGGCCAAGGTGTGGACCAGCTAGCAG-AGGTGATTCACAAGCTG 66120 Query 34514 AAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCT 34573 ||| ||| |||| || |||| ||| ||| |||||||||||| |||||| Sbjct 66121 CGTACGAATCCTACTGACCGACGGATTGTGCTGTCGGCGTGGAACCCGGCCGATCTCAAC 66180 Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTG 34633 |||||| || || || ||||||| ||||||| |||||||| || || ||||| | Sbjct 66181 GAGATGGCCCTGCCGCCTTGCCACATGTTCTGCCAGTTCTACGTTGCCAACGGGGAATTA 66240 Query 34634 TCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693 || || ||| | || || ||||||| |||||||| | || ||||| ||||||||||| Sbjct 66241 TCGTGTCAGATGTACCAGCGATCGGCCGACATGGGTCTTGGAGTGCCTTTCAACATTGCC 66300 Query 34694 AGTTACGCTCTGCTCAC 34710 || ||||| ||||| || Sbjct 66301 AGCTACGCGCTGCTGAC 66317 Score = 190 bits (210), Expect = 2e-43 Identities = 343/497 (69%), Gaps = 12/497 (2%) Strand=Plus/Minus Query 6635 GTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGT 6694 || ||||| ||||| || ||||||||||| ||||| || | |||||||| ||||||| Sbjct 66317 GTCAGCAGCGCGTAGCTGGCAATGTTGAAAGGCACTCCAAGACCCATGTCGGCCGATCGC 66258 Query 6695 TGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCAC 6754 || || | ||| || || | ||||| || || |||||||| ||||||| ||||||| Sbjct 66257 TGGTACATCTGACACGATAATTCCCCGTTGGCAACGTAGAACTGGCAGAACATGTGGCAA 66198 Query 6755 GGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTG 6814 || || || |||||| |||||| |||||||||||| ||| ||| |||| || | Sbjct 66197 GGCGGCAGGGCCATCTCGTTGAGATCGGCCGGGTTCCACGCCGACAGCACAATCCGTCGG 66138 Query 6815 TCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTCCGCTCCCTGTCC 6873 ||| ||| ||| || ||| ||||| | |||| ||||||||| | || || || Sbjct 66137 TCAGTAGGATTCGTACGCAGCTTGTGAATCACCT-CTGCTAGCTGGTCCACACCTTGGCC 66079 Query 6874 CGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTA 6933 | ||||| || | | || |||| || |||||||| | ||||||||| ||||| Sbjct 66078 AGTGTAGTCTGCATGCATGTCCGTGTACTTGGCACCAAAGTGACGCCACTGGAAGCCGTA 66019 Query 6934 GACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCG 6993 ||||| || | ||| || |||||||| | | || || | |||||| | || || Sbjct 66018 AACCGGTCCAAGGTCTCCAACCTCCCGATCCTGCAGTCCTCGGCTATCCAGATACTCGCG 65959 Query 6994 AGACCCGTGAGCGTCCCAGATCT-----TCACCCCCCGGGACGAGAGCTCCTTGGTGTTC 7048 || || | ||||||| || | || | | | | ||| | | || | Sbjct 65958 CGATCCATTGCCGTCCCAAATATGAATATCTTTCTGCTGCA-GAGTG----TGGGCACTT 65904 Query 7049 GTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTC 7108 ||| | || || | |||||||| ||||||||| | || || |||| |||| ||||| Sbjct 65903 GTGTCTCCACTAATAAACCACAGTAGCTCCTCGGCTACACCTCGCCAGAACACCCGTTTG 65844 Query 7109 GTCGTCAGCAGCGGAAA 7125 |||||||||| ||||| Sbjct 65843 GTCGTCAGCAATGGAAA 65827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448232607360240