Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq290 118 7e-22 seq188 113 3e-20 seq135 91.5 1e-13 >seq290 Length=60535 Score = 118 bits (130), Expect = 7e-22 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| || ||||| ||||| || || ||||| ||||| || || | Sbjct 10465 AAAATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCG 10524 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||||| |||| | | || || |||||| ||||| || || | ||||| || Sbjct 10525 TCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCTGAC 10584 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || |||||||| || || || |||| |||||| | || ||| Sbjct 10585 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGACTAC 10644 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 10645 AACATCCAGAAGGAGTCGAC 10664 >seq188 Length=115905 Score = 113 bits (124), Expect = 3e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 23601 ATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGT 23660 |||| | || |||||||||||||| || ||| | || || || |||||||| || || || Sbjct 15616 ATTAGTCAAGATGCAGATTTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGT 15557 Query 23661 TGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACC 23720 || | ||||| | | || | | || ||||| || ||||| ||||| | || Sbjct 15556 GGAGCCTTCGGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCC 15497 Query 23721 GCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGG 23780 ||| || || |||||||| || || || ||||| || ||||| |||| ||||| | | Sbjct 15496 GCCTGACCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAG 15437 Query 23781 CGATTACAACATACAAAAAGAGTCCAC 23807 ||| |||||||| || || ||||| || Sbjct 15436 CGACTACAACATCCAGAAGGAGTCTAC 15410 >seq135 Length=100430 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || || | || || || || || || ||||| || || | Sbjct 43050 AAGATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGAGCCG 42991 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||||| | | || | | || || || ||| ||||| ||||| | ||||| || Sbjct 42990 TCGGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGAC 42931 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || || ||||| || || || |||| ||||| | |||||||| Sbjct 42930 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGATTAC 42871 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 42870 AACATCCAGAAGGAGTCTAC 42851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337987696661036