Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq290 147 5e-30 seq188 132 1e-25 seq135 132 1e-25 seq204 118 3e-21 >seq290 Length=60535 Score = 147 bits (162), Expect = 5e-30 Identities = 162/215 (75%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||| || || || || || || || ||||| ||||| ||||| Sbjct 10465 AAAATGC---AGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAG 10521 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || |||| ||| || || ||||| || || ||||||||||| || |||||||| || Sbjct 10522 CCGTCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCT 10581 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| || || ||||||||||| || |||||||| || || | ||||| | || Sbjct 10582 GACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGAC 10641 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || ||| |||| || || || || ||||| || || Sbjct 10642 TACAACATCCAGAAGGAGTCGACCCTGCACCTGGT 10676 >seq188 Length=115905 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || | || || || |||||||| || || ||||| || ||| Sbjct 15603 CAGATTTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCGGAC 15544 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| |||||||| |||||||| ||||| ||||| || |||||||| Sbjct 15543 TCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 15484 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || ||||| || || || | || || ||| || ||| || Sbjct 15483 CGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 15424 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 15423 CAGAAGGAGTCTACGCTCCACCTGGT 15398 >seq135 Length=100430 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || || || |||||||| ||||| || ||| Sbjct 43044 CAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGAGCCGTCGGAC 42985 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||||||||| ||||| || || || |||||||| Sbjct 42984 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGACCAGCAG 42925 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| || || | || || |||||| ||| || Sbjct 42924 CGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGATTACAACATC 42865 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 42864 CAGAAGGAGTCTACTCTTCACCTGGT 42839 >seq204 Length=54989 Score = 118 bits (130), Expect = 3e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || || || || ||||| ||||| ||||| || ||| Sbjct 44216 CAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCGGAC 44275 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||| || || ||||| || || || |||||||| || |||||||| || |||||||| Sbjct 44276 AGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGACCAGCAG 44335 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || | || || ||| || Sbjct 44336 CGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAACATC 44395 Query 178104 CAAAA 178108 || || Sbjct 44396 CAGAA 44400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203649196940498