Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq290 158 1e-33 seq188 149 6e-31 seq135 145 7e-30 seq204 141 9e-29 >seq290 Length=60535 Score = 158 bits (174), Expect = 1e-33 Identities = 177/234 (76%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || ||||| | |||||| ||||| || ||||||||| ||||| ||||| Sbjct 10697 CCACCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCC 10638 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || || ||||| |||| |||||||||||||||||||| ||||| ||||| ||||| | Sbjct 10637 GACAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGC 10578 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTC 41811 || | | |||||||||| ||||| ||||| || | || | |||| || ||| Sbjct 10577 GGGATTCCCTCCTTGTCCTGAATTTTCTGCTT-GACATTGTCAATGCTGTCCGACGGCTC 10519 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| || | ||| || || || ||||| || ||||| |||||||||||||| || Sbjct 10518 CACGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 10465 >seq188 Length=115905 Score = 149 bits (164), Expect = 6e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||||| || ||||| ||||||||| ||||| |||||| Sbjct 15380 CCGCCTCGCAGACGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15439 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||| ||||| |||| ||||| ||||| | || Sbjct 15440 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 15499 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| |||||||| ||| | | | | ||| | |||||| Sbjct 15500 ATGCCTTCCTTGTCCTGGATCTTTTGCTT-GACGTTGTCGATCGAGTCCGAAGGCTCCAC 15558 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| ||| ||||| || || |||| ||||| |||||||||||||| || Sbjct 15559 GTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCATCTT 15609 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||||| || || || ||||||||| ||||| |||||| Sbjct 15152 CCGCCTCGAAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15211 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||| ||||| |||| ||||| ||||| | || Sbjct 15212 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 15271 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| |||||||| ||| | | | | ||| | |||||| Sbjct 15272 ATGCCTTCCTTGTCCTGGATCTTTTGCTT-GACGTTGTCGATCGAGTCCGAAGGCTCCAC 15330 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||| ||||| || || |||| ||||| ||||| |||||||| Sbjct 15331 GTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 15378 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||||| || || || ||||||||| ||||| ||||| Sbjct 14696 CCGCCACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCACTC 14755 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||| ||||| |||| ||||| ||||| | || Sbjct 14756 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 14815 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| |||||||| ||| | | | | ||| | |||||| Sbjct 14816 ATGCCTTCCTTGTCCTGGATCTTTTGCTT-GACGTTGTCGATCGAGTCCGAAGGCTCCAC 14874 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||| ||||| || || |||| ||||| ||||| |||||||| Sbjct 14875 GTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 14922 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||||| || || || ||||||||| ||||| ||||| Sbjct 14924 CCGCCTCGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCACTC 14983 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||| ||||| |||| ||||| ||||| | || Sbjct 14984 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 15043 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| |||||||| ||| | | | | ||| | |||||| Sbjct 15044 ATGCCTTCCTTGTCCTGGATCTTTTGCTT-GACGTTGTCGATCGAGTCCGAAGGCTCCAC 15102 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||| ||||| || || |||| ||||| ||||| |||||||| Sbjct 15103 GTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 15150 >seq135 Length=100430 Score = 145 bits (160), Expect = 7e-30 Identities = 174/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||||| || || || ||||||||| ||||| || ||| Sbjct 42821 CCACCGCGAAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 42880 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| |||||||||||||| ||||| ||||| ||||| ||||| | ||| Sbjct 42881 AGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGA 42940 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| || || |||||| ||| | | | | ||| || |||||| Sbjct 42941 ATGCCTTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 42999 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATC 41868 || | || || || || || |||| |||||| ||||| |||||||| || || Sbjct 43000 GTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCATCTTCTC 43053 >seq204 Length=54989 Score = 141 bits (156), Expect = 9e-29 Identities = 148/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| ||||| ||||| |||| |||||||||||||||||||| | Sbjct 44402 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 44343 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||||||||| ||||| | || | | |||||||||| |||||| ||||| || | Sbjct 44342 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTT-GACATTG 44284 Query 41793 ACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 || | |||| || |||||| || | ||| || || || ||||||| ||||| || Sbjct 44283 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 44224 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 44223 AAGATCTGCATG 44212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462273274120400