Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq343 114 1e-20 >seq343 Length=80906 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| || || || || |||| ||| || ||||| |||||||| ||||| |||||||| Sbjct 73814 ATGGCCCTGCCGCCTTGCCACATGTTCTGCCAGTTCTACGTTGCCAACGGGGAATTATCG 73873 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 || || | |||||| |||||| || ||||| ||||| || || ||||||||||| | Sbjct 73874 TGTCAGATGTACCAGCGATCGGCCGACATGGGTCTTGGAGTGCCTTTCAACATTGCCAGC 73933 Query 19092 TATGCACTTCTTAC-CTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAAT 19150 || || || || || | || | || || || || || ||||| ||| | || || || || Sbjct 73934 TACGCGCTGCTGACACGAC-TGGTTGCACAAGTGACGGGACTAAAACCTGGCGAGTTCAT 73992 Query 19151 TCATACAATGGGGGATGCACATATTTACTTGAATCAT 19187 || || || || ||||| | ||| |||| ||| Sbjct 73993 CCACGTTATCGGCGACGCACACGTGTACCTGAACCAT 74029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399474094878390