Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq343 212 7e-50 >seq343 Length=80906 Score = 212 bits (234), Expect = 7e-50 Identities = 302/420 (72%), Gaps = 4/420 (1%) Strand=Plus/Minus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 ||||| ||||| ||||| ||||| ||||| ||||| || | ||||||||||| || || Sbjct 74040 AGGGGTTCCACATGGTTCAGGTACACGTGTGCGTCGCCGATAACGTGGATGAACTCGCCA 73981 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAG-GTCAGCAGGGAGTAGCTGGCTATGTT 145802 || | || ||||| | || || |||| || | |||||||| | ||||||||| ||||| Sbjct 73980 GGTTTTAGTCCCGTCACTTGTGCAACCA-GTCGTGTCAGCAGCGCGTAGCTGGCAATGTT 73922 Query 145803 GAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCC 145862 ||| ||||| || || |||||||| |||| |||||||||| ||| || || | ||||| Sbjct 73921 GAAAGGCACTCCAAGACCCATGTCGGCCGATCGCTGGTACATCTGACACGATAATTCCCC 73862 Query 145863 GCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922 | || |||||||||||||| | | |||||| |||||||||||||| || || || Sbjct 73861 GTTGGCAACGTAGAACTGGCAGAACATGTGGCAAGGCGGCAGGGCCATCTCGTTGAGATC 73802 Query 145923 CGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCC 145982 ||||||||||| || | || || | || | | || ||| | | || Sbjct 73801 GGCCGGGTTCCACGCCGACAGCACAATCCGTCGGTCAGTAGGATTCGTACGCAGCTTGTG 73742 Query 145983 TATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACGT 146041 |||| || ||||||||||| || || || ||| |||| | || | |||| || Sbjct 73741 AATCACCTCTGCTAGCTGGTCCACACCTTGGCCAGTGTAGTCTG-CATGCATGTCCGTGT 73683 Query 146042 ACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCC 146101 || ||| || ||||| | ||||||||| ||||| || || || ||||| || ||||| Sbjct 73682 ACTTGGCACCAAAGTGACGCCACTGGAAGCCGTAAACCGGTCCAAGGTCTCCAACCTCCC 73623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590031496853680