Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1672 154 1e-32 seq2652 149 5e-31 seq2358 134 1e-26 seq4565 123 2e-23 seq4505 98.7 9e-16 seq1517 93.3 4e-14 >seq1672 Length=23672 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | || ||||| ||| | |||||||| || || ||||||||||||| Sbjct 22096 TACCACCGCGAAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGC 22155 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| ||||| ||||||||||| || |||||| |||| ||||||||||| || || | Sbjct 22156 TCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCG 22215 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| |||||||| ||| || || || || | |||| | ||||| ||| | Sbjct 22216 GAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCA 22275 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | |||| ||| | || |||||||||| || || || || ||||||||| Sbjct 22276 CGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCATG 22325 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | || ||||| ||||| |||||||| || || |||||||| |||| Sbjct 22552 TACCGCCTCGCAGACGCAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGC 22611 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| ||||| ||||||||||| || |||||| |||| ||||||||||| || || | Sbjct 22612 TCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCG 22671 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| |||||||| ||| || || || || | |||| | ||||| ||| | Sbjct 22672 GAATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCA 22731 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | |||| ||| | || |||||||||| || || || || ||||||||| Sbjct 22732 CGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCATG 22781 Score = 145 bits (160), Expect = 7e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | |||||||| || || |||||||||||||||| ||||| || Sbjct 23024 CAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTC 23083 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| || |||||| |||| ||||||||||| || || || ||||| |||||||| Sbjct 23084 CTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTC 23143 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || || | |||| | ||||| ||| || |||| ||| | || Sbjct 23144 CTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGGGTAATGGT 23203 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||||| || || || || |||||||| Sbjct 23204 CTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 23236 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | |||||||| || || |||||||| ||||||| ||||| || Sbjct 22340 CAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTC 22399 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| || |||||| |||| ||||||||||| || || || ||||| |||||||| Sbjct 22400 CTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTC 22459 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || || | |||| | ||||| ||| || || | || | ||| Sbjct 22460 CTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGT 22519 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||||| || || || || |||||||| Sbjct 22520 CTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 22552 >seq2652 Length=38300 Score = 149 bits (164), Expect = 5e-31 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | || ||||| ||| | |||||||| || || ||||||||||||| Sbjct 33048 TACCACCGCGAAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGC 33107 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| ||||| ||||||||||| || |||||| |||| ||||||||||| || || | Sbjct 33108 TCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCG 33167 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| |||||||| ||| || || || || | ||| | ||||| ||| | Sbjct 33168 GAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGNTCGAGTCCGACGGCTCCA 33227 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||| ||| | || |||||||||| || || || || |||||||| Sbjct 33228 CGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 33276 >seq2358 Length=23655 Score = 134 bits (148), Expect = 1e-26 Identities = 297/441 (67%), Gaps = 6/441 (1%) Strand=Plus/Minus Query 132917 GCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGA 132976 ||||| || |||||||| || || ||| |||| ||| ||||||||||| ||| || Sbjct 15255 GCGCATGTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGT 15196 Query 132977 CACC--ACCGAGTAAGTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATG 133034 || | || || ||| || ||||||| | |||| ||| |||||||| || Sbjct 15195 CAGCTTACTGAT--AGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATA 15138 Query 133035 AAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGTC 133094 ||| ||||||| || | || || | | | ||| ||||||||||| ||||| Sbjct 15137 TAAGCGCCACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTC 15078 Query 133095 TTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCG 133154 ||| | | ||| |||| | || || || | | |||||||| || || || Sbjct 15077 TTGTACTTCTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCA 15018 Query 133155 GCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACG 133214 || ||||| || || | |||||| || ||||| |||| ||||| ||| | || | Sbjct 15017 TTCAGAATCTGATTACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATC 14958 Query 133215 AGATACTGGTTGACCA-CTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGA 133273 ||||||| ||| || | | |||| ||| || || | || || | | || | || || Sbjct 14957 AGATACTTGTTAACGATCGTGAA-CTCACCAGCCAACACACGACGGTTGTACATGTTGGA 14899 Query 133274 CGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCAT 133333 |||| | || |||| ||| ||||||||||| || ||||| ||||| | || || ||||| Sbjct 14898 CGTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCAT 14839 Query 133334 GTACGCCACCAACAAAGAGTT 133354 | || |||| || ||||| Sbjct 14838 GGGTGCAACCAGCAGCGAGTT 14818 >seq4565 Length=138104 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || || |||||||| || || |||||| || Sbjct 118003 CAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTC 118062 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| || || ||| |||| ||||||||||| || || || || ||||||||||| Sbjct 118063 CTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTC 118122 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 |||||| || || || | || | | |||||| ||| || |||| || | || Sbjct 118123 CTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGT 118182 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || ||||||||||| Sbjct 118183 CTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 118215 >seq4505 Length=81093 Score = 98.7 bits (108), Expect = 9e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || | ||||| ||||||||||| || || ||| |||| Sbjct 71259 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 71200 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 ||||||||||| || || || || ||||||||||| ||||| || || || | || Sbjct 71199 AGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 71140 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | | |||||| ||| || |||| || | || ||||| |||| || || ||||| Sbjct 71139 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAG 71080 Query 118731 ATCTGCATG 118739 ||||||||| Sbjct 71079 ATCTGCATG 71071 >seq1517 Length=75306 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || | ||||| ||||||||||| || || ||| |||| Sbjct 72491 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 72432 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || || || || ||||||||||| ||||| || || || | || Sbjct 72431 AGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 72372 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | | |||||| ||| || |||| || | || ||||| |||| || || ||||| Sbjct 72371 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAG 72312 Query 118731 ATCTGCATG 118739 ||||||||| Sbjct 72311 ATCTGCATG 72303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433797925354264