Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2988 111 3e-19 seq5877 109 1e-18 >seq2988 Length=161616 Score = 111 bits (122), Expect = 3e-19 Identities = 259/383 (68%), Gaps = 12/383 (3%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || || ||||| ||| |||| ||||| || || ||||||||||| || ||| |||| Sbjct 89972 CTACCCCACTTGCTGTTCTACGGACCTCCAGGTACTGGCAAGACGTCCACGATCGTGGCT 90031 Query 254061 CT--GGCCCGAACCCTGTTGGGC--GAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAA 254116 | ||| | ||| || |||| | || || || | ||| | || |||||||| Sbjct 90032 GTGGGGCGCCAACTCT-TTGGCCCGGACTTCCGCAAGAACGGCCGCTTCCTGGAGCTGAA 90090 Query 254117 CGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGAT 254176 ||| || || || || || | | || || ||||| ||| |||||| ||| || || Sbjct 90091 CGCGTCGGATGACCGAGGTATCAAGGTGGTACGCGAGAAGGTCAAGAGCTTCGCCCAG-G 90149 Query 254177 GTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGC 254236 || | | || ||| |||| ||||| || || || | | || || ||||| Sbjct 90150 GTGCCATCAGCAGTGCCA--GCGGCCTACCGCCCTTTAAAATCATCGTACTCGATGAGGC 90207 Query 254237 GGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGT 254296 || ||||||||| ||||||||| || || || || || | |||||||| | ||| Sbjct 90208 CGATTCCATGACGGGCGACGCGCAATCTGCGCTGCGTCGCATGATGGAGAATTATTCCAA 90267 Query 254297 TGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGCTGGCT 254354 || || || |||||||| | || |||||||| |||| ||||| | || |||| Sbjct 90268 GGTCACTCGCTTTTGCCTCATCTGTAACTACGTGAGTCG--CATCATTGAGCCTGTGGCC 90325 Query 254355 TCTCGGTGCGCCAAGTTTCGATT 254377 || || || ||||| || || || Sbjct 90326 TCGCGTTGTGCCAAATTCCGCTT 90348 >seq5877 Length=64605 Score = 109 bits (120), Expect = 1e-18 Identities = 108/138 (78%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 157197 AAAAGTCCGCATCCAAA--CAAAACTGCTGCTTCTCACGTTCGAGCAAAACCCCGGGCTT 157254 ||||||||||||||| | ||||| ||||| |||| ||| ||| |||| ||| Sbjct 9606 AAAAGTCCGCATCCAGAGTGAAAAC--CTGCTCCTCAGCGGCGACACCAACGCCGGCCTT 9663 Query 157255 GCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTC 157314 | ||||||| |||| | ||||| |||||||||||||| || |||||||| |||||||| Sbjct 9664 GGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTC 9723 Query 157315 CATCCACTCGAATGGGTT 157332 |||||| || || ||||| Sbjct 9724 CATCCAGTCAAAAGGGTT 9741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073681900624256