Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq759 134 1e-26 seq4565 125 6e-24 seq1672 125 6e-24 seq4505 120 2e-22 seq1517 120 2e-22 >seq759 Length=119387 Score = 134 bits (148), Expect = 1e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| ||||| ||||||||| |||||||||||| |||| ||| |||| ||| Sbjct 32576 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCC 32635 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| ||||| ||||| ||||| || || | || ||||||||| Sbjct 32636 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGG 32695 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || |||||||| || | | |||| | |||||| |||| || ||||||||| Sbjct 32696 ATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTG 32755 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 || |||| |||||||| ||||| ||||| ||||| Sbjct 32756 CCGGTCAAGGTCTTCACGAAGATCTGCATACCGCCTC 32792 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| ||||| ||||||||| ||||||||||| |||| ||| |||| ||| Sbjct 32804 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCACTCAGCGTGCGGCCGTCCTCC 32863 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| ||||| ||||| ||||| || || | || ||||||||| Sbjct 32864 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGG 32923 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || |||||||| || | | |||| | |||||| |||| || ||||||||| Sbjct 32924 ATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTG 32983 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 || |||| |||||||| ||||| ||||| ||| || Sbjct 32984 CCGGTCAAGGTCTTCACGAAGATCTGCATCTTGACT 33019 Score = 127 bits (140), Expect = 2e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| ||||||||||| |||| ||| |||| ||| Sbjct 32120 ACCAGGTGGAGNGTAGACTCCTTCTGGATGTTGTAGTCACTCAGCGTGCGGCCGTCCTCC 32179 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| ||||| ||||| ||||| || || | || ||||||||| Sbjct 32180 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGG 32239 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || |||||||| || | | |||| | |||||| |||| || ||||||||| Sbjct 32240 ATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTG 32299 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 || |||| |||||||| ||||| ||||| ||||| Sbjct 32300 CCGGTCAAGGTCTTCACGAAGATCTGCATACCGCCTC 32336 Score = 127 bits (140), Expect = 2e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| ||||||||||| |||| ||| |||| ||| Sbjct 32348 ACCAGGTGGAGNGTAGACTCCTTCTGGATGTTGTAGTCNCTCAGCGTGCGGCCGTCCTCC 32407 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| ||||| ||||| ||||| || || | || ||||||||| Sbjct 32408 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGG 32467 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || |||||||| || | | |||| | |||||| |||| || ||||||||| Sbjct 32468 ATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTG 32527 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 || |||| |||||||| ||||| ||||| ||||| Sbjct 32528 CCGGTCAAGGTCTTCACGAAGATCTGCATACCGCCTC 32564 >seq4565 Length=138104 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| || ||||||||| ||||||||||| ||| ||| |||| || Sbjct 118007 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTCCTCG 118066 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| ||||| || || | |||||||||||| | Sbjct 118067 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGA 118126 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| || | | ||||||| |||||| || | || || |||||| Sbjct 118127 ATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTG 118186 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||| || ||||| || || || ||||| || Sbjct 118187 CCCGTAAGGGTCTTGACGAAAATCTGCATTTT 118218 >seq1672 Length=23672 Score = 125 bits (138), Expect = 6e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| |||| |||| |||| || Sbjct 22344 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCCTCG 22403 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| || || | || ||||||||| | Sbjct 22404 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGA 22463 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | |||| | |||||| |||| || ||||||||| Sbjct 22464 ATCTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTG 22523 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 || |||| |||||||| ||||| ||||| ||||| Sbjct 22524 CCGGTCAAGGTCTTCACGAAGATCTGCATACCGCCTC 22560 Score = 123 bits (136), Expect = 2e-23 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| |||| ||| |||| ||| Sbjct 22800 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCC 22859 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| ||||| ||||| ||||| || || | || ||||||||| Sbjct 22860 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGG 22919 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || |||||||| || | | |||| |||||| || | || || |||||| Sbjct 22920 ATCTTTTGCTTGACGTTGTCGATCGAGTCCGANGGCTCCACGTCNAGNGTNATNGTCTTG 22979 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| |||||||| ||||| |||||| Sbjct 22980 CCGGTCAANGTCTTCACGAAGATCTGCATG 23009 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| |||| |||| |||| || Sbjct 22572 ACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCCTCG 22631 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| || || | || ||||||||| | Sbjct 22632 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGA 22691 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | |||| |||||| || | |||||| |||||| Sbjct 22692 ATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGGGTAATGGTCTTG 22751 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| |||||||| ||||| |||||| Sbjct 22752 CCGGTCAACGTCTTCACGAAGATCTGCATG 22781 >seq4505 Length=81093 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| ||||||||||| || ||| |||| || || || || |||||||| | Sbjct 71261 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 71202 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| ||||| || || | |||||||||||| ||||| ||||| || Sbjct 71201 TCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 71142 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | ||||||| |||||| || | || || ||||||||||||| |||||||||| Sbjct 71141 CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 71082 Query 45327 AGATTTGCATG 45337 |||| |||||| Sbjct 71081 AGATCTGCATG 71071 >seq1517 Length=75306 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| ||||||||||| || ||| |||| || || || || |||||||| | Sbjct 72493 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 72434 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| ||||| || || | |||||||||||| ||||| ||||| || Sbjct 72433 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 72374 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | ||||||| |||||| || | || || ||||||||||||| |||||||||| Sbjct 72373 CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 72314 Query 45327 AGATTTGCATG 45337 |||| |||||| Sbjct 72313 AGATCTGCATG 72303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395045626398982