Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5877 161 1e-34 seq2358 147 3e-30 >seq5877 Length=64605 Score = 161 bits (178), Expect = 1e-34 Identities = 387/580 (67%), Gaps = 13/580 (2%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| || ||||| |||||||| | ||| || | ||||| || || | || Sbjct 9953 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 10012 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||| ||||| || |||||||| ||||| ||| || || || |||||| Sbjct 10013 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAG 10072 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-----CGCTG-TCA 33755 || ||||| || ||||| || || | || | ||| || || ||| | || Sbjct 10073 ATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTC- 10131 Query 33756 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 | | |||||| | ||||| | |||||||| | |||||||| || || || |||||| Sbjct 10132 -GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCA 10189 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 | ||||| || || || | || || | || || || || | || || Sbjct 10190 CGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTAG 10249 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 | ||||| |||||||| |||||||| ||||| || || ||||| || | |||||||| Sbjct 10250 ACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGGC 10309 Query 33936 ATCTGCACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCATCACTGG 33993 | ||||||||| | | || |||| || || || || ||||| || || ||||||| Sbjct 10310 ACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTGG 10367 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 34053 |||| || || || | || || || || || | | |||| || || || ||| Sbjct 10368 CTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTCC 10427 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | || |||| || | | || | || || | ||||| || || ||||| || | Sbjct 10428 AGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCTT 10487 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153 | || ||||| | ||| | || || | || || ||||| Sbjct 10488 TCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAA 10527 >seq2358 Length=23655 Score = 147 bits (162), Expect = 3e-30 Identities = 703/1110 (63%), Gaps = 8/1110 (1%) Strand=Plus/Minus Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 || || || || ||||| ||||| || | || | |||| |||||| || || | || Sbjct 14639 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGGGCTCTCGAACGCGTAG 14580 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 || | ||| || ||||| ||||| | || || || |||||||| || || | ||| | | Sbjct 14579 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 14520 Query 62808 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62867 | || || | ||| |||| || ||||||||| || | || || | || ||||| Sbjct 14519 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGG 14460 Query 62868 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT 62927 || | || || |||||||| || | |||| | | || || || | | Sbjct 14459 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCGTTTTCC 14400 Query 62928 ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA 62987 |||||||| || || ||||| |||| || ||||| || ||||||| | || Sbjct 14399 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTG 14340 Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 || | || | || ||| | || || | ||| || || || || || || || Sbjct 14339 TACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGGTTC 14280 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63107 ||| |||| || ||||| || || ||||| || || || |||||||||| Sbjct 14279 GACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCG 14220 Query 63108 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAG-ATTTGTATCTCCTTTCTC 63165 |||| || || ||| | | || |||| || ||| | | | | ||||| || Sbjct 14219 TCTAGGATAGCGAACCACAGCTGCT-GAGCGTTGATTGTCTTACGCGCACGTCCTTCCT- 14162 Query 63166 TTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGAC 63225 | ||||| ||||| ||| ||||| || ||||| | || || | |||| Sbjct 14161 TCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAG 14102 Query 63226 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63285 ||| | ||||| | ||| ||||| || | ||| ||||| ||||| ||||||| Sbjct 14101 CTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGAT 14042 Query 63286 CAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCT 63345 |||| | ||| || || ||| | || | | | || ||| || || |||| Sbjct 14041 CAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCT 13982 Query 63346 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63405 | ||||| |||||| | | | || | |||||||| |||||||| || || | Sbjct 13981 TACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACG 13922 Query 63406 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63465 || || || ||| ||||| || | || | ||| |||| ||| | || | || Sbjct 13921 AGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCA 13862 Query 63466 ACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCAC 63525 |||| || ||||| ||||| || || || || ||| ||| |||| | |||| | Sbjct 13861 ACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGC 13802 Query 63526 GAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63583 | || | | | | |||| ||| || || || ||| ||||||||| | |||||| | Sbjct 13801 GGATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTG 13744 Query 63584 TTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 |||| ||||| || ||||| || || ||||| ||| | ||| || || Sbjct 13743 CTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGA 13684 Query 63644 AGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703 ||||| || |||| | || || || || || | ||||| | |||||||| || | Sbjct 13683 AGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAA 13624 Query 63704 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63763 || | || | || | ||||||||| | || || | || || | | || || || Sbjct 13623 CTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCC 13564 Query 63764 TACTGCGACACGCATTAACATGTGCTGAGG 63793 || || ||||||| | ||| ||||| || Sbjct 13563 TAACGCTACACGCAGAATCATTTGCTGCGG 13534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629769245753760