Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5877 150 2e-31 seq2358 150 2e-31 >seq5877 Length=64605 Score = 150 bits (166), Expect = 2e-31 Identities = 387/581 (67%), Gaps = 15/581 (3%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| || ||| | |||||||| | ||| || | ||||| || || | || Sbjct 9953 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 10012 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 36276 |||||||| ||||| ||||| || |||||||| ||||| ||| || || || || ||||| Sbjct 10013 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGA-GCAGAAAGAGCCCGAGAAGAA 10071 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACT---GTC 36330 || ||||| || || || || || | || | ||| || || ||| ||| Sbjct 10072 GATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTC 10131 Query 36331 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390 | | |||||| | ||||| | |||||||| | |||||||| || ||||| || || Sbjct 10132 --GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGC 10188 Query 36391 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 36450 | | ||||| || || || | || || | || || ||||| | || || Sbjct 10189 ACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTA 10248 Query 36451 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 36510 | ||||| |||||||| |||||||| || || || || ||||| || | |||||||| Sbjct 10249 GACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGG 10308 Query 36511 AATCTGTACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCGTCACTG 36568 | ||| ||||| | | || |||| || || || || ||||| || ||||||||| Sbjct 10309 CACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTG 10366 Query 36569 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTC 36628 ||||| || || || | || || || || || | | ||||| || || || || Sbjct 10367 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTC 10426 Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 || || |||| || | | || | || || | ||||| || || ||||| || Sbjct 10427 CAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCT 10486 Query 36689 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAA 36729 || || ||||| | ||| | || || | ||||| || || Sbjct 10487 TTCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAA 10527 >seq2358 Length=23655 Score = 150 bits (166), Expect = 2e-31 Identities = 716/1129 (63%), Gaps = 14/1129 (1%) Strand=Plus/Minus Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540 || || || |||||||| ||||| || | || | |||| | |||| || || | || Sbjct 14639 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGGGCTCTCGAACGCGTAG 14580 Query 65541 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 65600 || | ||| || ||||| || || | || || || |||||||| || || | ||| | | Sbjct 14579 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 14520 Query 65601 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 65660 | || || | ||| |||| || ||||||||| || | || || | || ||||| Sbjct 14519 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGG 14460 Query 65661 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTATT 65720 || | || || |||||||| || | |||| | | || || | || | || Sbjct 14459 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAA---CACACCGTTT 14403 Query 65721 ---ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 65777 |||||||| || || ||||| |||| || || || || ||||||| | | Sbjct 14402 TCCACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGAC 14343 Query 65778 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 65837 | || | || | || ||| | || || | ||| || || || || || || Sbjct 14342 GTGTACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGG 14283 Query 65838 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 65897 || ||| |||| || ||||| || || ||||| || || || ||||||||| Sbjct 14282 TTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGA 14223 Query 65898 GATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAG-ATTTGTATCTCTTTT 65955 | |||| || || ||| | | || |||| || ||| | | | | || || Sbjct 14222 GCGTCTAGGATAGCGAACCACAGCTGCT-GAGCGTTGATTGTCTTACGCGCACGTCCTTC 14164 Query 65956 CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAG 66015 || | ||||| | ||||| ||| ||||| || ||||| | || || |||| Sbjct 14163 CT-TCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAG 14105 Query 66016 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 66075 || ||| | ||||| | ||| ||||| || | ||| ||||| ||||| |||| Sbjct 14104 GAGCTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGA 14045 Query 66076 GATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 66135 ||||||| | ||| || || ||| || || | || | || ||| || || | Sbjct 14044 GATCAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGT 13985 Query 66136 TCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCA 66195 |||| ||||| |||||| | | | || |||||||| |||||||| || || | Sbjct 13984 TCTTACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGA 13925 Query 66196 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 66255 || || || ||| ||||| || | || | ||| |||| ||| | || | Sbjct 13924 ACGAGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACAC 13865 Query 66256 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTG 66315 |||||| || ||||| || || || | || || || ||| ||| ||||| | | | Sbjct 13864 GCAACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGG 13805 Query 66316 CACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 66373 | || || | | | | |||| ||| || || || ||| ||||||||| | ||||| Sbjct 13804 CGCGGATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCA 13747 Query 66374 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 66433 | | |||| || || || |||||||| ||| |||||| ||| | ||| || || Sbjct 13746 TTGCTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCA 13687 Query 66434 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 66493 ||||| || |||| || || || || || | ||||| | |||||||| || Sbjct 13686 AGAAGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAA 13627 Query 66494 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 66553 | || | || | || | ||||||||| | || || | || || | | || || Sbjct 13626 GAACTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGAT 13567 Query 66554 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 66602 |||| || ||||||| | ||| ||||| || | || || | |||| Sbjct 13566 GCCTAACGCTACACGCAGAATCATTTGCTGCGGCCGCTCCACCACCTTG 13518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658122268783280