Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq343 149 5e-31 >seq343 Length=80906 Score = 149 bits (164), Expect = 5e-31 Identities = 308/457 (67%), Gaps = 20/457 (4%) Strand=Plus/Minus Query 20888 CGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTA 20947 ||| |||||||| || || | ||||| | | ||||| || || ||||| ||| Sbjct 74077 CGGGAACGGACGTGGTGTGCGTGTAAGCTGCTTCTGAAGGGGTTCCACATGGTTCAGGTA 74018 Query 20948 AACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGC 21007 ||||| ||||| || | ||| | || || || || | || ||||| || || || Sbjct 74017 CACGTGTGCGTCGCCGATAACGTGGATGAACTCGCCAGGTTTTAGTCCCGTCACTTGTGC 73958 Query 21008 GATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTC 21067 | ||| ||||| || ||||||||||| ||||| || || || || || |||||||| Sbjct 73957 AACCAGTCGTGTCAGCAGCGCGTAGCTGGCAATGTTGAAAGGCACTCCAAGACCCATGTC 73898 Query 21068 GGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAA 21127 ||| || | |||||||| ||| || || | ||||| || ||||| ||||| || || Sbjct 73897 GGCCGATCGCTGGTACATCTGACACGATAATTCCCCGTTGGCAACGTAGAACTGGCAGAA 73838 Query 21128 AACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAAC 21187 | ||| ||||| || || |||||| ||| || || ||||||||||| ||| || Sbjct 73837 CATGTGGCAAGGCGGCAGGGCCATCTCGTTGAGATCGGCCGGGTTCCACGCCGACAGCAC 73778 Query 21188 GATGCGCCGATC-GTGGG--------GCCGCCTGTTAATTAGATCCACCACGTAACGC-A 21237 || || || || || || || || ||| ||| |||| | || | Sbjct 73777 AATCCGTCGGTCAGTAGGATTCGTACGCAGCTTGTGAAT------CACCTC----TGCTA 73728 Query 21238 GCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAAT 21297 |||||||||| || || || ||||| || | || |||||| || ||||| | Sbjct 73727 GCTGGTCCACACCTTGGCCAGTGTAGTCTGCATGCATGTCCGTGTACTTGGCACCAAAGT 73668 Query 21298 GTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334 | | ||||||||| ||||| ||||| || || || || Sbjct 73667 GACGCCACTGGAAGCCGTAAACCGGTCCAAGGTCTCC 73631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427743978560160