Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2358 176 6e-39 seq5877 150 2e-31 >seq2358 Length=23655 Score = 176 bits (194), Expect = 6e-39 Identities = 721/1127 (64%), Gaps = 10/1127 (1%) Strand=Plus/Minus Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 || || || ||||| || ||||| || | || | |||| |||||| || || | || Sbjct 14639 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGGGCTCTCGAACGCGTAG 14580 Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562 || | ||| || ||||| || || | || || ||||||||||| || || | || | | Sbjct 14579 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 14520 Query 71563 TTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 71622 | || || | ||| |||| || ||||||||| || | || || | || ||||| Sbjct 14519 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGG 14460 Query 71623 TTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTATT 71682 || | || || |||||||| || | ||| | | || || || | | Sbjct 14459 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCGTTTTCC 14400 Query 71683 ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA 71742 ||||||| || || ||||| |||| || || || || ||||||| | | Sbjct 14399 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTG 14340 Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 || | || | ||| ||| | || || | ||| || || || || || || || Sbjct 14339 TACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGGTTC 14280 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 ||| |||| || ||||| || || || || || || || |||||||||| Sbjct 14279 GACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCG 14220 Query 71863 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATT-CTTGTATCTCTTTTCTC 71920 |||| || || ||| | | || |||| || ||| | || | | | || || || Sbjct 14219 TCTAGGATAGCGAACCACAGCTGCT-GAGCGTTGATTGTCTTACGCGCACGTCCTTCCT- 14162 Query 71921 TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGA 71979 | ||||| | | ||| | ||| ||||| || ||||| ||| | || | |||||| Sbjct 14161 TCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCA-GCACTCGTACAGACCAGGA 14103 Query 71980 CATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGA 72039 ||| || ||||| | ||| ||||| |||| | | |||| ||||| |||||| Sbjct 14102 GCTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGA 14043 Query 72040 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099 ||||| | ||| || || ||| | || | || | ||| ||| || || ||| Sbjct 14042 TCAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTC 13983 Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159 || ||||| |||||| | | | || | |||||||| |||||||| || || | Sbjct 13982 TTACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAAC 13923 Query 72160 ACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 72219 ||| || || ||| ||||| || | || | ||| |||| ||| | || | | Sbjct 13922 GAGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGC 13863 Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 72279 ||||| || ||||| || || || | || || || ||| ||| ||||| | |||| Sbjct 13862 AACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCG 13803 Query 72280 CGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 72337 || || | ||| | |||| ||| || || || ||| ||||||||| | |||||| Sbjct 13802 CGGATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATT 13745 Query 72338 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 72397 | |||| || || || |||||||| ||| |||||| ||| | ||| || || Sbjct 13744 GCTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAG 13685 Query 72398 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 72457 ||||| || |||| || || || || || | ||||| | |||||||| || Sbjct 13684 AAGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA 13625 Query 72458 ATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTC 72517 | || | |||| || | ||||||||| | || || | || || | | || || | Sbjct 13624 ACTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGC 13565 Query 72518 CTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564 ||| ||| ||||||| | ||| ||||| || | || || | |||| Sbjct 13564 CTAACGCTACACGCAGAATCATTTGCTGCGGCCGCTCCACCACCTTG 13518 >seq5877 Length=64605 Score = 150 bits (166), Expect = 2e-31 Identities = 387/581 (67%), Gaps = 15/581 (3%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| || ||||| ||||| || | ||| || | ||||| || || | || Sbjct 9953 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 10012 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 |||||||| ||||| ||||| || |||||||| || || ||| || || || || ||||| Sbjct 10013 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGA-GCAGAAAGAGCCCGAGAAGAA 10071 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACT---GTC 42237 ||| ||||| || || || || || | || | ||| || || ||| ||| Sbjct 10072 GATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTC 10131 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 | | |||||| | ||||| | |||||||| | |||||||| || || || ||||| Sbjct 10132 --GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGC 10188 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 | | ||||| || || || | || || | || || || || | || || Sbjct 10189 ACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTA 10248 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 | || || |||||||| |||||||| ||||| || || ||||| || | ||||||| Sbjct 10249 GACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGG 10308 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCA--GCTAAATTTTCGTTCACTATTCCGTCACTG 42475 ||||| ||||| | | || ||||| || || || |||||||| || ||||||||| Sbjct 10309 CACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTG 10366 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTC 42535 ||||| || || || | || || || || || | | |||| || | || || Sbjct 10367 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTC 10426 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 || || |||| || | | || | || || ||||||| || || || || || Sbjct 10427 CAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCT 10486 Query 42596 TTTTTATACATATTCCAGATATCATGATATTGAATTGGGAA 42636 || || ||||| | ||| | || || | ||||| ||||| Sbjct 10487 TTCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAA 10527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671087673287920