Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5877 187 4e-42 seq2358 127 3e-24 seq5552 104 3e-17 seq1793 104 3e-17 seq343 100 4e-16 >seq5877 Length=64605 Score = 187 bits (206), Expect = 4e-42 Identities = 599/893 (67%), Gaps = 46/893 (5%) Strand=Plus/Minus Query 124995 CTGTTTCCCAT-CAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 ||||| ||||| |||| | || || | ||| | |||||||| || || |||||||||| Sbjct 10530 CTGTTCCCCATTCAGGAA-CACGAAGTGTGGCAGATGTACAAGAAAGCCGAGGCCTCCTT 10472 Query 125054 TTGGACGGTCGAAGAGGTCGATCT-GTCCAAGGACCTGTACGATTGGGAGACTCGTTTGA 125112 ||||||| || ||| |||| || || || | |||| | || ||| | | | | Sbjct 10471 CTGGACGGCTGAGGAGCTCGACCTTGTGCACG-ACCTCAAGGACTGGAGCAAGC---TCA 10416 Query 125113 CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172 | || | |||||| | || || |||| | | |||||||| || | | || || | Sbjct 10415 CGGACAACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGTGACGGTA 10356 Query 125173 TCGTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGACCATTCCAGAGGTGTC 125230 |||| ||||| || || | || || || ||| || || | || |||| || Sbjct 10355 TCGTGAACGAGAACTTG--GCCATGAACTTCAGCAACGAAGTGCAGGTGCCCGAGGC-TC 10299 Query 125231 GT-GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 || |||| || || ||||| ||| ||||||||| | |||||||| | ||||| | Sbjct 10298 GTTGCTTCTATGGCTTCCAGATCGCCATTGAGAACATTCACTCGGAGGTCTACTCACTGC 10239 Query 125290 TGATTGACATGTACATT-----CGCGATCCGCAACGTAAACACATGCTCTTTAACGCAAT 125344 | ||||||| |||||| ||||||| || | || ||| ||| | || || Sbjct 10238 TCATTGACACGTACATCAAGGACGCGATCGAGAAGG---AC-CAT-CTCCTGCGTGCCAT 10184 Query 125345 CGACACGGTGCCGTCTAT-ACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGA-C 125402 || || | || | | | ||| || |||||||| |||| | |||| ||| | Sbjct 10183 TGAGACCATCCCTTGTGTCACG-AAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGC 10125 Query 125403 GACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTT 125462 | | || || ||| | || | ||| |||| ||||| || || || ||||||||||| Sbjct 10124 GTGTA-TCCTCCTACCCGGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTC 10066 Query 125463 TCGGGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 ||||| ||| ||| ||||||||||||| ||||||||||| ||||||||||| |||| Sbjct 10065 TCGGGCTCTTTCTGCT-CCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAG 10007 Query 125522 GCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACT 125581 | |||||| | || ||| ||||||||| | ||| ||||| ||| || | Sbjct 10006 CTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCCTGCCTTTT 9947 Query 125582 GTTTCGCAACTATCTGCGTC-CCGAG-TGCAGATCCAGCGATGAAAAGGTCATCAACATT 125639 || ||| ||| ||| || || ||| | ||| || | | | |||| | Sbjct 9946 GTACTCCAAG---CTG-GTCACCAAGCTGCCGGAG-AGCCGTGTACACGAGATCAT--TC 9894 Query 125640 GTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCAT 125698 || || || ||| ||| || || |||||| | || || || || || ||| | Sbjct 9893 GTGAC----GCTGTGGTGATTGAGCACGAGTTTGTGCGTGACTCGCTCCCTGTGGAGC-T 9839 Query 125699 GATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT 125758 |||||| ||||||| || |||||| ||||||| ||||| ||||| || ||||| || Sbjct 9838 GATTGGTATGAACTCTGCCCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCT 9779 Query 125759 GTACGAG-TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCA 125817 ||| | ||| | | | |||||| ||| |||| ||||| || ||||| | ||| || Sbjct 9778 CTACTCGCTTGGTGTGTC-CAAGATCTACCACGCTAAGAACCCTTTTGACTGGATGGACA 9720 Query 125818 GCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || || | || ||||||||||||||||||||| || |||||||| Sbjct 9719 TGATCTCTCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTAC 9667 >seq2358 Length=23655 Score = 127 bits (140), Expect = 3e-24 Identities = 318/475 (67%), Gaps = 6/475 (1%) Strand=Plus/Plus Query 96910 TCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTG 96969 |||||||||| || |||||||| ||||| || || || | || |||| || ||| | Sbjct 13931 TCTACTTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACG 13990 Query 96970 GCTTTGAAGAGGCAC-GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTC 97028 | ||| | |||| | ||| | ||||||||||| || || |||||||| ||| | ||| Sbjct 13991 GTAATGA-GCTGCACCGCGCCCGCGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTC 14049 Query 97029 ATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGT 97088 |||||| | || | | | |||| | ||||| | | || ||| || | || ||| Sbjct 14050 ATGAAGAGAGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCTGGT 14109 Query 97089 CTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC 97148 |||| ||| ||||||||||| |||||||| || ||| |||||| | || || Sbjct 14110 CTGTACGAGTGCTGGGGCGATGAGTTTGAAGCTCTGTATGAAAAGTACGAGAAGGAAGGA 14169 Query 97149 CG-ATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGT-GACGGCTCAGG 97206 || ||| |||| | || | || | | |||||| || ||| | ||| |||||| Sbjct 14170 CGTGCGCGTAAGAC-AATCAACGCTCAGCAGCTGTGGTTCGCTATCCTAGAC-GCTCAGA 14227 Query 97207 TAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAAC 97266 | ||||| ||| || | ||| ||||||||||| | | || ||||| ||||| | Sbjct 14228 TTGAGACGGGAGTGCCCTTCATGCTCTACAAGGACGCAGCTAACCGCAAGTCGAACCAGC 14287 Query 97267 GCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTC 97326 ||||||| || ||| | ||| | ||| ||| | | |||||| | || | Sbjct 14288 AGAACTTGGGTACGATCCGTTCCAGCAACTTATGCTGCGAAGTCATGGAGTACACGTCAC 14347 Query 97327 CGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 | || ||| |||||| ||| |||| || || ||||| | |||||| || Sbjct 14348 CCGATGAGGTGGCAGTGTGCAACTTGGCGTCTGTGGCGCTGCCTATGTTTGTGGA 14402 Score = 95.1 bits (104), Expect = 2e-14 Identities = 146/204 (72%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 98015 CATCCCGGAAGA-GTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGC 98073 ||| ||||| || ||| | |||| |||||||| || |||||||| | | || | || Sbjct 15048 CATTCCGGATGATGTTAAGGAGAAG-TACAAGACGGTGTGGGAGAT--CAAGCAGAAGGC 15104 Query 98074 TGATC--GATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCT 98131 || || || || | || ||| | || | || || ||||||||| ||||| || | Sbjct 15105 TGTTCTGGACCTGTCGGCTGACCGTGGCGCTTATATCTGCCAGAGTCAGTCGTTGAACAT 15164 Query 98132 GTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAA 98191 || | ||||| || || |||| |||| || || ||||||||||| ||||| || Sbjct 15165 CCACATCGCCGACCCGACTATCAGTAAGCTGACGTCCATGCACTTTTACGCTTGGAAGAA 15224 Query 98192 GGGCCTCAAGACGGGCATGTACTA 98215 ||| |||||||| ||||||||||| Sbjct 15225 GGGACTCAAGACCGGCATGTACTA 15248 >seq5552 Length=49832 Score = 104 bits (114), Expect = 3e-17 Identities = 217/320 (68%), Gaps = 10/320 (3%) Strand=Plus/Plus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||| ||||| |||| ||||||||| |||||| || || |||||||| | ||||||| Sbjct 10583 GAAACCGTGGGTCAAGTGGCCTCCACTGGGCAGGTCCAGGCCCATGATGCGGTCGTGCGG 10642 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 | | | ||||||||||| |||||||| |||||| ||||| || || || Sbjct 10643 GCGCAGCAGAGCCGTGTACACGGCGAAGTTGGCGGGCGAGCCAGAGTAGGGCTGCACGTT 10702 Query 127563 CACTCCCCA---TTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAG 127619 || ||||| |||| ||| || | | | || | || |||||||| || Sbjct 10703 GACGCCCCACTTCTCGG---CGTCCAGACCGTAGGCCGTCAGGGCGCGCTGCTGGCACAG 10759 Query 127620 CAGTTCGATGCGATCGATAAACTCGTTACCACCATAGTA--TCGCTTTCCGGGCCTACCC 127677 | ||||| ||||| | ||||||||| || ||||| ||| ||| ||| |||| Sbjct 10760 GATCTCGATCTTGTCGATGACCTCGTTACCGCCGTAGTAACGCGCGTTC--GGCAGACCC 10817 Query 127678 TCCGAGTACTTGTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAG 127737 || | ||||||||| |||| ||||| | || ||| || || | | | ||| ||| Sbjct 10818 TCGGCATACTTGTTGGTGAGGCACGAGCCCAGGCAGTCCATGACGGCACGCGAGGTGAAG 10877 Query 127738 TTTTCCGATGCGATCAACTC 127757 || ||||| ||||| | ||| Sbjct 10878 TTCTCCGAAGCGATGAGCTC 10897 >seq1793 Length=48883 Score = 104 bits (114), Expect = 3e-17 Identities = 217/320 (68%), Gaps = 10/320 (3%) Strand=Plus/Minus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||| ||||| |||| ||||||||| |||||| || || |||||||| | ||||||| Sbjct 43502 GAAACCGTGGGTCAAGTGGCCTCCACTGGGCAGGTCCAGGCCCATGATGCGGTCGTGCGG 43443 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 | | | ||||||||||| |||||||| |||||| ||||| || || || Sbjct 43442 GCGCAGCAGAGCCGTGTACACGGCGAAGTTGGCGGGCGAGCCAGAGTAGGGCTGCACGTT 43383 Query 127563 CACTCCCCA---TTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAG 127619 || ||||| |||| ||| || | | | || | || |||||||| || Sbjct 43382 GACGCCCCACTTCTCGG---CGTCCAGACCGTAGGCCGTCAGGGCGCGCTGCTGGCACAG 43326 Query 127620 CAGTTCGATGCGATCGATAAACTCGTTACCACCATAGTA--TCGCTTTCCGGGCCTACCC 127677 | ||||| ||||| | ||||||||| || ||||| ||| ||| ||| |||| Sbjct 43325 GATCTCGATCTTGTCGATGACCTCGTTACCGCCGTAGTAACGCGCGTTC--GGCAGACCC 43268 Query 127678 TCCGAGTACTTGTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAG 127737 || | ||||||||| |||| ||||| | || ||| || || | | | ||| ||| Sbjct 43267 TCGGCATACTTGTTGGTGAGGCACGAGCCCAGGCAGTCCATGACGGCACGCGAGGTGAAG 43208 Query 127738 TTTTCCGATGCGATCAACTC 127757 || ||||| ||||| | ||| Sbjct 43207 TTCTCCGAAGCGATGAGCTC 43188 >seq343 Length=80906 Score = 100 bits (110), Expect = 4e-16 Identities = 262/392 (67%), Gaps = 6/392 (2%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || || || || || || ||||| ||||||||| | |||| || ||||||| ||| Sbjct 73631 GGAGACCTTGGACCGGTTTACGGCTTCCAGTGGCGTCACTTTGGTGCCAAGTACACGGAC 73690 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACACTC 70184 ||| | ||||||| | || || ||||| || || | ||||| | ||| ||| | Sbjct 73691 ATGCATG-CAGACTACACTGGCCAAGGTGTGGACCAGCTAGCAGAGG-TGATTCACAAGC 73748 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | || ||||| || || | |||| || ||| | ||||| || || ||| | Sbjct 73749 TGCGTACGAATCCTACTGACCGACGGATTGTGCTGTCGGCGTGGAACCCGGCCGATCTCA 73808 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGATGGCAAA 70303 || | ||||| || || || || ||| |||| || ||||| ||| | | || || Sbjct 73809 ACGAGATGGCCCTGCCGCCTTGCCACATGTTCTGC-CAGTTCTACGTTGCCAACGGGGAA 73867 Query 70304 TTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATT 70363 || || || ||||| ||| | ||||||||||| || || || || || |||||| Sbjct 73868 TTATCGTGTCAGATGTACCAGCGATCGGCCGACATGGGTCTTGGAGTGCCTTTCAACATT 73927 Query 70364 GCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAG 70423 || ||||| | || |||| | || |||| || | || || || ||| | |||| Sbjct 73928 GCCAGCTACGCGCTGCTGACACGACTGGTTGCACAAGTGACGGGACTAAAACCTGGCGAG 73987 Query 70424 TTCGTACACACCATTGGCGACGCTCACGTGTA 70455 ||| | ||| || |||||||| |||||||| Sbjct 73988 TTCATCCACGTTATCGGCGACGCACACGTGTA 74019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741002305179920