Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq5977 125 6e-24 >seq5977 Length=36784 Score = 125 bits (138), Expect = 6e-24 Identities = 237/347 (68%), Gaps = 4/347 (1%) Strand=Plus/Minus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTC 5559 |||||||||| || || ||||| ||||| | | || || || | | ||||||| Sbjct 24912 CACGCCCGTGCTACCAAAGCCGCCGGCGCCACGAGCAGTCTCCTCGATCTCCTCCACCTC 24853 Query 5560 TTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || || ||| || | ||| ||| ||||| || | ||||| || ||| Sbjct 24852 CTGGACCTCCGGGTACTCGATCTTTTCGAGGATGAGCTGAGCCACACGGTCCCCGCGCTT 24793 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 || |||||| | || |||| ||||||||| | |||||||||||||||||||| Sbjct 24792 GACTGGGAAATCCTCGTT--CGAATGGTTGAACAGAATTACGCCCACGTTGCCGCGGTAA 24735 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 || ||||| || || || |||||| ||||||||| | ||| || || || ||||| Sbjct 24734 TCAGCGTCAATGACACCAGCGCCCGTGTCGATGAACTTCTTCCATGCGAGACCTGAGCGA 24675 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCACT 5797 || |||||||| ||||||| || ||||||| || |||||||| |||| Sbjct 24674 GGTGCCACGCGTGCGTAGCAGCCGTCGGGAACGGCGATGATAAGGTCCGTCTTGACCAGA 24615 Query 5798 CGCCGACCGCCCGCAGGGACGATGCAGTCGCAAGCGCTGCAGAGGTC 5844 | | |||||| || ||||||| | |||| | ||| ||||||| Sbjct 24614 CCCTTACCGCCTGCTGGGACGACGGCGTCGTAGGCGGCCGAGAGGTC 24568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430022208009104