Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq343 127 1e-24 >seq343 Length=80906 Score = 127 bits (140), Expect = 1e-24 Identities = 329/493 (67%), Gaps = 15/493 (3%) Strand=Plus/Minus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| ||| || ||||| || || | |||||| ||||| ||||| || | | |||| Sbjct 74052 AGCTGCTTCTGAAGGGGTTCCACATGGTTCAGGTACACGTGTGCGTCGCCGATAACGTGG 73993 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTG--AGGAGAAAGT 25530 | ||||| || |||| ||| || || || | || | || || |||| || || || Sbjct 73992 ATGAACTCGCCAGGTTTTAGTCCCGTCACTTGTGCAACCA-GT-CGTGTCAGCAGCGCGT 73935 Query 25531 AGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGA 25590 ||||||| ||||| || || || || | |||||||| || || | |||||| | |||| Sbjct 73934 AGCTGGCAATGTTGAAAGGCACTCCAAGACCCATGTCGGCC-GATCGCTGGTACATCTGA 73876 Query 25591 CACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCT 25650 ||||| | || ||| | ||||| ||||| || | ||| ||| || || || || Sbjct 73875 CACGATAATTCCCCGTTGGCAACGTAGAACTGGCAGAACATGTGGCAAGGCGGCAGGGCC 73816 Query 25651 ATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTT- 25709 || | | || |||||||| || ||| | || | | ||| || || Sbjct 73815 ATCTCGTTGAGATCGGCCGGGTTCCACGCCGACAGCACAATCCGTCGGTCAGTAGGATTC 73756 Query 25710 GTCC----CTGATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGT 25765 || | || | | ||| | || | ||||| ||||| || || | ||||| Sbjct 73755 GTACGCAGCTTGTGA-ATCACCTCTGCT----AGCTGGTCCACACCTTGGCCAGTGTAGT 73701 Query 25766 CTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTC 25825 |||| |||||||||||||| || || || | | ||||||||| ||||| ||||||| Sbjct 73700 CTGCATGCATGTCCGTGTACTTGGCACCAAAGTGACGCCACTGGAAGCCGTAAACCGGTC 73641 Query 25826 CTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCAT 25885 | ||||||||| | |||| | || | || | |||||| | | || | || |||| Sbjct 73640 CAAGGTCTCCAACCTCCCGATCCTGCAGTCCTCGGCTATCCAGATACTCGCGCGATCCAT 73581 Query 25886 TGGCGTCCCAGAT 25898 || ||||||| || Sbjct 73580 TGCCGTCCCAAAT 73568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340112138787366