Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq4565 98.7 8e-16 seq1672 86.0 5e-12 seq4505 82.4 6e-11 seq2652 82.4 6e-11 seq759 82.4 6e-11 >seq4565 Length=138104 Score = 98.7 bits (108), Expect = 8e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || | || | || || ||||||| |||||||| ||| || Sbjct 118024 CTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGC-CGTCCTCGAGCTGCTTGCCGGCGA 118082 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | ||||||||| || ||| | | ||||||||| |||||||||||||| | Sbjct 118083 AGATCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTTGACAT 118142 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||| | || | | |||| |||| || ||||| || || || || || || | Sbjct 118143 TGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGA 118202 Query 48714 CAAAAATCTGCAT 48726 | ||||||||||| Sbjct 118203 CGAAAATCTGCAT 118215 >seq1672 Length=23672 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| || ||||||||||| || | || || ||||||| ||||| Sbjct 23034 TGAAGAGTAGACTCCTTCTGGATGTTGTAATC-GCTCAGGGTGCGACCGTCCTCGAGCTG 23092 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | ||||||||| || ||| | | |||||||||| ||| || Sbjct 23093 CTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTT 23152 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 |||||| | | | || || | || | | |||| |||| || ||||| || ||| Sbjct 23153 CTGCTTCACGTTGTCG--ATCGAGTCCGACGGCTCCACGTCGAGGGTAATGGTCTTGCCG 23210 Query 48701 GTGAGAGTTTTCACAAAAATCTGCATC 48727 || | || ||||| || ||||||||| Sbjct 23211 GTCAACGTCTTCACGAAGATCTGCATC 23237 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| || ||||||||||| || | || || ||||||| ||||| Sbjct 22122 TGAAGAGTAGACTCCTTCTGGATGTTGTAATC-GCTCAGGGTGCGACCGTCCTCGAGCTG 22180 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | ||||||||| || ||| | | |||||||||| ||| || Sbjct 22181 CTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTT 22240 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 |||||| | | | || || | || | | |||| |||| || ||||| || ||| Sbjct 22241 CTGCTTCACGTTGTCG--ATCGAGTCCGACGGCTCCACGTCGAGGGTAATGGTCTTGCCG 22298 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || |||||||| Sbjct 22299 GTCAACGTCTTCACGAAGATCTGCAT 22324 >seq4505 Length=81093 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 48537 CCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAA 48596 |||| || |||||||| || | | || ||||||| |||||||| ||| || | | Sbjct 71261 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 71202 Query 48597 TTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG 48656 | | ||||||||| || ||| | | ||||||||| ||||||||||||| | Sbjct 71201 TCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 71142 Query 48657 CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAA 48716 | ||| | || | | |||| |||| || ||||| || || || | || ||||||| Sbjct 71141 CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 71082 Query 48717 AAATCTGCAT 48726 | |||||||| Sbjct 71081 AGATCTGCAT 71072 >seq2652 Length=38300 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| || ||||||||||| || | || || ||||||| ||||| Sbjct 33074 TGAAGAGTAGACTCCTTCTGGATGTTGTAATC-GCTCAGGGTGCGACCGTCCTCGAGCTG 33132 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | ||||||||| || ||| | | |||||||||| ||| || Sbjct 33133 CTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTT 33192 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 |||||| | | | || | | || | | |||| |||| || ||||| || ||| Sbjct 33193 CTGCTTCACGTTGTCG--NTCGAGTCCGACGGCTCCACGTCGAGGGTAATGGTCTTGCCG 33250 Query 48701 GTGAGAGTTTTCACAAAAATCTGCATC 48727 || | || ||||| || ||||||||| Sbjct 33251 GTCAACGTCTTCACGAAGATCTGCATC 33277 >seq759 Length=119387 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/201 (70%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| ||| || || |||||||||||||||| || || | Sbjct 32821 CTCCTTCTGGATGTTGTAGTCACTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAA 32880 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || ||||||||||| || ||| | | |||||||||| || || ||||||| | Sbjct 32881 GATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTT 32940 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || || | || | || |||| || | || || || || ||||| | || ||| Sbjct 32941 GTCG--ATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTC 32998 Query 48713 ACAAAAATCTGCATCGTGTCT 48733 || || ||||||||| || || Sbjct 32999 ACGAAGATCTGCATCTTGACT 33019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421219666978142