Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5974 168 1e-37 seq420 168 1e-37 seq5594 145 1e-30 seq6032 80.6 4e-11 seq3609 80.6 4e-11 >seq5974 Length=111941 Score = 168 bits (186), Expect = 1e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 34028 CGCTAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTAT 34087 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || |||||||| || ||||||||| ||||||| | |||| || |||| Sbjct 34088 CCGTCGTCTCGCACGTCGTGGCGGTGTCAAGCGTATCTCTGGCCTCATCTACGAGGAGAC 34147 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | |||||| ||| ||| |||| || | || ||| || || Sbjct 34148 CCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACCTACACGGA 34207 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| ||||| || || || ||||||| |||| || || | || ||||| || Sbjct 34208 GCACGCTCGCCGTAAAACCGTGACGGCCATGGACGTCGTGTACGCTCTTAAGCGTCAGGG 34267 Query 16672 CCG 16674 ||| Sbjct 34268 CCG 34270 >seq420 Length=97367 Score = 168 bits (186), Expect = 1e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 76399 CGCTAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTAT 76340 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || |||||||| || ||||||||| ||||||| | |||| || |||| Sbjct 76339 CCGTCGTCTCGCACGTCGTGGCGGTGTCAAGCGTATCTCTGGCCTCATCTACGAGGAGAC 76280 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | |||||| ||| ||| |||| || | || ||| || || Sbjct 76279 CCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACCTACACGGA 76220 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| ||||| || || || ||||||| |||| || || | || ||||| || Sbjct 76219 GCACGCTCGCCGTAAAACCGTGACGGCCATGGACGTCGTGTACGCTCTTAAGCGTCAGGG 76160 Query 16672 CCG 16674 ||| Sbjct 76159 CCG 76157 >seq5594 Length=71340 Score = 145 bits (160), Expect = 1e-30 Identities = 188/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| |||||| || |||||||| || || |||||||| || ||| Sbjct 42375 GCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATTACCAAGCCCGCCATC 42316 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||||||||| || |||||| |||| || | ||||||| |||| Sbjct 42315 CGTCGTCTCGCACGTCGTGGTGGTGTGAAGCGTATCTCCGGCCTCATCTATGAGGAGACC 42256 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | ||||| ||| ||| |||| || || || ||| || ||| Sbjct 42255 CGCGGTGTCCTCAAGGTGTTCCTTGAGAACGTCATCCGCGACTCTGTCACCTACACTGAG 42196 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| || || || ||||||| | || || || | || ||||| ||| Sbjct 42195 CACGCCCGCCGTAAAACCGTGACGGCCATGGACGTTGTGTACGCTCTCAAGCGTCAGGGC 42136 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | |||| || || || Sbjct 42135 CGCACCCTTTACGGCTTCGG 42116 >seq6032 Length=81321 Score = 80.6 bits (88), Expect = 4e-11 Identities = 162/238 (68%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 16438 GCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTC 16496 |||||||||| |||| ||||||||| ||||| ||||| ||||| |||||||| || || | Sbjct 79631 GCGTCATCGCAAGAT-TCTTCGAGACAACATACAAGGCATCACTAAGCCAGCGATTCGAC 79573 Query 16497 GTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTG 16556 | || |||||||| | ||| || || |||| | |||||| | | |||| || | Sbjct 79572 GCCTTGCTCGTCGGGCTGGTGTGGTTCGCATCTCCGTCTTGGTCCACCACGAGACGCGCG 79513 Query 16557 ATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACG 16616 || ||| || || | || | || || || || || |||| | ||||||| Sbjct 79512 CAGTGCTGAGGACATTTTTGTCGAGTGCCATTCAAGACGCGATCACCTATTCGGAGCACG 79453 Query 16617 CTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 | || ||||| |||| ||||| || | || || | ||||| ||||| || Sbjct 79452 GACACCGCAAGACGATCACAGGAATGGACGTCATTTACGCGCTCAAACGCCAAGGTCG 79395 >seq3609 Length=8288 Score = 80.6 bits (88), Expect = 4e-11 Identities = 162/238 (68%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 16438 GCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTC 16496 |||||||||| |||| ||||||||| ||||| ||||| ||||| |||||||| || || | Sbjct 464 GCGTCATCGCAAGAT-TCTTCGAGACAACATACAAGGCATCACTAAGCCAGCGATTCGAC 406 Query 16497 GTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTG 16556 | || |||||||| | ||| || || |||| | |||||| | | |||| || | Sbjct 405 GCCTTGCTCGTCGGGCTGGTGTGGTTCGCATCTCCGTCTTGGTCCACCACGAGACGCGCG 346 Query 16557 ATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACG 16616 || ||| || || | || | || || || || || |||| | ||||||| Sbjct 345 CAGTGCTGAGGACATTTTTGTCGAGTGCCATTCAAGACGCGATCACCTATTCGGAGCACG 286 Query 16617 CTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 | || ||||| |||| ||||| || | || || | ||||| ||||| || Sbjct 285 GACACCGCAAGACGATCACAGGAATGGACGTCATTTACGCGCTCAAACGCCAAGGTCG 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069584326406