Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5877 167 3e-36 seq2358 158 2e-33 >seq5877 Length=64605 Score = 167 bits (184), Expect = 3e-36 Identities = 311/451 (69%), Gaps = 13/451 (3%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| || ||||| |||||||| | ||| || || ||||| || || | || Sbjct 9953 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 10012 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||| ||||| || |||||||| ||||| ||| || || || |||||| Sbjct 10013 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAG 10072 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-----CGCTG-TCA 33477 || ||||| || ||||| || || | || | ||| || || ||| | || Sbjct 10073 ATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTC- 10131 Query 33478 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | | |||||| | ||||| | |||||||| | |||||||| || || || |||||| Sbjct 10132 -GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCA 10189 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 | ||||| || || || | || || | || || || || | || || Sbjct 10190 CGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTAG 10249 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 | ||||| |||||||| |||||||| ||||| || || ||||| || | |||||||| Sbjct 10250 ACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGGC 10309 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCC--GCCAAATTTTCATTCACTATTCCGTCACTGG 33715 | ||| ||||| | | || |||| ||||| || || ||||| || |||||||||| Sbjct 10310 ACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTGG 10367 Query 33716 CTGCAAAAAACGCCAATACATGTTTTATAAA 33746 |||| || || || | || || || || || Sbjct 10368 CTGCGAAGAAGGCGAGCACGTGCTTGATGAA 10398 >seq2358 Length=23655 Score = 158 bits (174), Expect = 2e-33 Identities = 715/1126 (63%), Gaps = 8/1126 (1%) Strand=Plus/Minus Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696 || || || |||||||| ||||| || | || | |||| | |||| || || | || Sbjct 14639 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGGGCTCTCGAACGCGTAG 14580 Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62756 || | ||| || ||||| ||||| | || || || |||||||| || || | ||| | | Sbjct 14579 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 14520 Query 62757 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62816 | || || | ||| |||| || ||||||||| || | || || | || ||||| Sbjct 14519 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGG 14460 Query 62817 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT 62876 || | || || |||||||| || | |||| | | || || || | | Sbjct 14459 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCGTTTTCC 14400 Query 62877 ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62936 |||||||| || || ||||| |||| || || || || ||||||| | || Sbjct 14399 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTG 14340 Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996 || | || | || ||| | || || | ||| || || || || || || || Sbjct 14339 TACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGGTTC 14280 Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056 ||| |||| || ||||| || || ||||| || || || |||||||||| Sbjct 14279 GACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCG 14220 Query 63057 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAG-ATTTGTATCTCCTTTCTC 63114 |||| || || ||| | | || |||| || ||| | | | | ||||| || Sbjct 14219 TCTAGGATAGCGAACCACAGCTGCT-GAGCGTTGATTGTCTTACGCGCACGTCCTTCCT- 14162 Query 63115 TTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGAC 63174 | ||||| | ||||| ||| ||||| || ||||| | || || |||||| Sbjct 14161 TCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAG 14102 Query 63175 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63234 ||| | ||||| | ||| ||||| || | ||| ||||| ||||| ||||||| Sbjct 14101 CTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGAT 14042 Query 63235 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 63294 |||| | ||| || || ||| | || | || | || ||| || || |||| Sbjct 14041 CAGGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCT 13982 Query 63295 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63354 | ||||| |||||| | | | || | |||||||| |||||||| || || | Sbjct 13981 TACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACG 13922 Query 63355 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63414 || || || ||| ||||| || | || | ||| |||| ||| | || | || Sbjct 13921 AGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCA 13862 Query 63415 ACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCAC 63474 |||| || ||||| ||||| || || || || ||| ||| ||||| | |||| | Sbjct 13861 ACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGC 13802 Query 63475 GAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63532 | || | | | | |||| ||| || || || ||| ||||||||| | |||||| | Sbjct 13801 GGATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTG 13744 Query 63533 TTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 |||| ||||| || || ||||| || ||||| ||| | ||| || || Sbjct 13743 CTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGA 13684 Query 63593 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652 ||||| || |||| || || || || || | ||||| | |||||||| || | Sbjct 13683 AGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAA 13624 Query 63653 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63712 || | || | || | ||||||||| | || || | || || | | || || || Sbjct 13623 CTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCC 13564 Query 63713 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 63758 || || ||||||| | ||| ||||| || | || || | |||| Sbjct 13563 TAACGCTACACGCAGAATCATTTGCTGCGGCCGCTCCACCACCTTG 13518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622899373228720