Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2358 315 2e-80 seq343 96.9 9e-15 >seq2358 Length=23655 Score = 315 bits (348), Expect = 2e-80 Identities = 1062/1639 (65%), Gaps = 55/1639 (3%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 |||||||||||||| || || | | ||| || || || | ||| ||| |||||||| Sbjct 13627 TTCACGCACGCCACCCCTACTCTCTTCAACGCCGGCACGCCACGTCCTCAGTTGTCTTCT 13686 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | ||| |||| || || || ||||| || | ||||| || ||| | Sbjct 13687 TGCTTCCTATTGGCTATGCAGGATGACTCTATTGAGGGCATTTACGACACCCTAAAGCAA 13746 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || ||| || || || ||||| || ||| | || ||||| | || || Sbjct 13747 TGCGCCTGTATCTCTAAATGGGCGGGCGGTATCGGTATCAGTATGCACAACATCCGCGCC 13806 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||| ||||| |||||||| || | ||| || || | | |||||| | ||| Sbjct 13807 ACTAACAGCTACATCCGCGGCACGAACGGCTCCTCTAACGGCATTATCCCCATGTTGCGT 13866 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||||| || | || || | || || |||||||| ||||| |||||||| || |||| Sbjct 13867 GTGTTTAACGACACGGCTCGCTATGTGGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTC 13926 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 ||||| || | ||||| || ||||| | || ||||| || || || || || ||| Sbjct 13927 GCTATCTACTTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAAC 13986 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| || || || || |||| || || || ||||| |||| | Sbjct 13987 CACGGTAATGAGCTGCACCGCGCCCGCGACTTGTTTTACGCGCTGTGGGTGCCTGATCTC 14046 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || |||||| | |||||||| | || ||| | || || || ||||| ||| Sbjct 14047 TTCATGAAGAGAGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCT 14106 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 ||||| | ||| ||||| || || | || ||||| || |||||||| || ||| Sbjct 14107 GGTCTGTACGAGTGCTGGGGCGATGAGTTTGAAGCTCTGTATGAAAAGTACGAGAAGGAA 14166 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 ||| || ||||||||||| ||| ||| |||| ||||| || ||| | || | ||| Sbjct 14167 GGACGTGCGCGTAAGACAATCAACGCTCAGCAGCTGTGGTTCGCTATCCTAGACGCTCAG 14226 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 |||||||| ||| |||| ||| | ||||| || | ||||||||||| |||||| Sbjct 14227 ATTGAGACGGGAGTGCCCTTCATGCTCTACAAGGACGCAGCTAACCGCAAGTCGAACCAG 14286 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 ||| || | ||||| || | |||||| |||| ||| | || || ||||| | Sbjct 14287 CAGAACTTGGGTACGATCCGTTCCAGCAACTTATGCTGCGAAGTCATGGAGTACACGTCA 14346 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGAT 364326 ||||| ||| || || || ||| | ||||| | ||||| || |||||| || | Sbjct 14347 CCCGATGAGGTGGCAGTGTGCAACTTGGCGTCTGTGGCGCTGCCTATGTTTGTGGAAAAC 14406 Query 364327 GGTACTTTTGACCACCAGCATCTTTATGACGT----AACCT-ATCATGCTACTTGCAATC 364381 ||| || ||| || || || ||||| || || | |||| || |||| | Sbjct 14407 GGTGTGTTCGACTACAAGAGACTGTATGAGGTGGTCAAGGTGATCACGC-----GCAACC 14461 Query 364382 TCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATG 364440 || ||||||| |||||| || |||||||| || | || || || | || || ||| Sbjct 14462 TCAACAAGGTCATCGACGTCAACTATTATCCTGTTGCAGAGGCTCGCAAG-TCCAACATG 14520 Query 364441 CGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAG 364500 || ||||| || |||||| |||| || ||||| || || || | || || | | || Sbjct 14521 CGCCATCGTCCCATTGGTATTGGCGTCCAGGGTCTGGCGGATGCGTTCATCCTCATGAAC 14580 Query 364501 ATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTAT 364560 || || || || | ||||||| | || ||| | ||||| || || || || Sbjct 14581 TACGCGTTCGAGAGCCCGCAAGCTCGTGAATTGAACAAGAACATCTTCGAGACGATCTAC 14640 Query 364561 TTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTAT 364620 ||||| || ||| | ||| ||| | ||| || | | | |||| Sbjct 14641 TTTGCTGCCATGGAGACGTCG------ATGGAGATTGCCACGG---AATTGGGTCCTTAC 14691 Query 364621 GAGGGGTCCC----CTCTTTCGC-----AGGGAAAATTCCAGTTTGATCTATGGAATGTC 364671 ||| || || |||| || |||| | |||||||| || | ||| ||| Sbjct 14692 GAGACGTTCCAGGGCTCTCCGGCCAGTAAGGGTATCTTCCAGTTCGACATGTGGGGCGTC 14751 Query 364672 ACGC---CATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGT 364728 || | |||||| | |||||||||| | ||| |||| | || || ||| Sbjct 14752 ACACCTTCATCTGGGCTTTGGAACTGGGCCGCACTAAAAGATGACGTCATTAAACACGGT 14811 Query 364729 ACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGA 364788 || ||||| || | || |||||||| || || || || || |||||||| || Sbjct 14812 CTCCGTAACTCGCTGCTGGTTGCACCCATGCCGACAGCCTCCACGGCTCAGATCCTGGGC 14871 Query 364789 AACAACGAGTGCTTCGAACCGTTTACAAG--CAATCTTTATTCACGCCGGGTTCTTTCCG 364846 |||||||||| |||| || ||||| | ||| | || || || || | | | Sbjct 14872 AACAACGAGTCTATCGAGCC--TTACACGTCCAACATGTACAACCGTCGTGTGTTGGCTG 14929 Query 364847 GAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGG 364906 | || || || | ||||| ||||| || | ||||| ||| ||| | ||| | || Sbjct 14930 GTGAGTTCACGATCGTTAACAAGTATCTGATGAAGGAGCTTATCGAGCTCGGCATTTG-- 14987 Query 364907 GTGACAGCATGAAGAACTATATCA-----TCGCCGCTAATGGTTCTGTGCAGAACATTCC 364961 ||| || |||| || |||| | | | ||| || |||||||| || Sbjct 14988 --GAC-GCCGGAAGTACGTAATCAGATTCTGAATGATGGTGGCTCGGTGCAGAA-GGTCA 15043 Query 364962 AGGA-TTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC-GA 365019 |||| |||| || ||| | ||| | ||||| || || ||||| || || || || Sbjct 15044 AGGACATTCCGGATGATGTTAAGGAGAAGTACAAGACGGTGTGGGAGAT---CAAGCAGA 15100 Query 365020 A--CTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTA 365077 | || | | || || |||| || || || |||| |||||| ||||| |||||||| | Sbjct 15101 AGGCTGTTCTGGACCTGTCGGCTGACCGTGGCGCTTATATCTGCCAGAGTCAGTCGTTGA 15160 Query 365078 ACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGA 365137 || | ||| | | || || | ||||| || |||||||| || |||| |||| Sbjct 15161 ACATCCACATCGCCGACCCGACTATCAGTAAGCTGACGTCCATGCACTTTTACGCTTGGA 15220 Query 365138 AATCCGGTCTTAAGACAGG 365156 | || || ||||| || Sbjct 15221 AGAAGGGACTCAAGACCGG 15239 >seq343 Length=80906 Score = 96.9 bits (106), Expect = 9e-15 Identities = 346/532 (65%), Gaps = 8/532 (2%) Strand=Plus/Plus Query 111359 CGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACT-TGCAGCAAAAA 111417 ||| || || |||||||||||| | ||| |||| ||| | ||| ||||||| ||| Sbjct 73501 CGAGGAGCTACTGTGGTTTATTAGTGGAGACACAAGTGCCCAC--ACTCTGCAGCAGAAA 73558 Query 111418 -ATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTC 111476 || | | |||||||| || |||||||| || || | ||| ||| || || Sbjct 73559 GATATTCATATTTGGGACGGCAATGGATCGCGCGAGTATCTGGATAGCCGAGGACTGCAG 73618 Query 111477 GACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCA 111536 || || | || || || ||||| |||||||| || || ||||| ||||||||||| Sbjct 73619 GATCGGGAGGTTGGAGACCTTGGACCGGTTTACGGCTTCCAGTGGCGTCACTTTGGTGCC 73678 Query 111537 GACTACAAAACCATGCACGACTCATATGATTCACAGGGAACTGATCAATTA-CAGAATGT 111595 | |||| |||||| | || | || || || || || |||| || Sbjct 73679 AAGTACACGGACATGCATGCAGACTACACTGGCCAAGGTGTGGACCAGCTAGCAGAG-GT 73737 Query 111596 CATTGATCAAATTAAGAAC-AACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACC 111654 ||| | ||| | | || || || ||| || || ||| | || || ||||||| Sbjct 73738 GATTCA-CAAGCTGCGTACGAATCCTACTGACCGACGGATTGTGCTGTCGGCGTGGAACC 73796 Query 111655 CAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTAC 111714 | | | | | ||||| || || || || || | | |||||||| || || Sbjct 73797 CGGCCGATCTCAACGAGATGGCCCTGCCGCCTTGCCACATGTTCTGCCAGTTCTACGTTG 73856 Query 111715 ACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTC 111774 | ||||| | || || || ||||| |||||||| || || || |||||||| || | Sbjct 73857 CCAACGGGGAATTATCGTGTCAGATGTACCAGCGATCGGCCGACATGGGTCTTGGAGTGC 73916 Query 111775 CGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCA 111834 | || || ||||| || ||||| || || || | | | || || | || || | Sbjct 73917 CTTTCAACATTGCCAGCTACGCGCTGCTGACACGACTGGTTGCACAAGTGACGGGACTAA 73976 Query 111835 AACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCA 111886 |||| || || ||||| ||||||||||| || || || || ||| ||||| Sbjct 73977 AACCTGGCGAGTTCATCCACGTTATCGGCGACGCACACGTGTACCTGAACCA 74028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303251033403044