Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5877 293 4e-74 seq2358 248 2e-60 >seq5877 Length=64605 Score = 293 bits (324), Expect = 4e-74 Identities = 578/846 (68%), Gaps = 27/846 (3%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 ||||||||||| || || |||| |||||| || |||||| | ||||| | | ||| Sbjct 10497 ATGTACAAGAAAGCCGAGGCCTCCTTCTGGACGGCTGAGGAGCTCGACCTTGTGCACGAC 10438 Query 42369 ---ACGGCCGGCTGGGAG-TCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACT 42424 | || | | | || |||| | | || ||| | ||| |||| || | || Sbjct 10437 CTCAAGGACTGGAGCAAGCTCACGGACAACGAGCGACAC----TTCATCAAGCACGTGCT 10382 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 ||||||||||| ||| |||||| || || || |||||| |||||| | |||| || Sbjct 10381 CGCCTTCTTCGCAGCCAGTGACGGTATCGTGAACGAGAACTTGGCCATGAACTTCAGCAA 10322 Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 || |||||| ||||| || |||||||| ||||||||||| ||||| |||||| | Sbjct 10321 CGAAGTGCAGGTGCCCGAGGCTCGTTGCTTCTATGGCTTCCAGATCGCCATTGAGAACAT 10262 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCG 42601 ||||| ||||| ||| | |||||||| ||||||||||| ||| | ||||| Sbjct 10261 TCACTCGGAGGTCTACTC---ACTGCTCATTGACACGTACATCAAGGACGCGATCGAGAA 10205 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 || || | ||||| ||||| || || || ||| ||||||||| ||||||| Sbjct 10204 GGACCATCTCCTGCGTGCCATTGAGACCATCCCTTGTGTCACGAAGAAGGCTCACTGGGC 10145 Query 42662 GCTCAACTGGATCGAGAGTCCCGAC-GCAACGTTCGGC---GAGAGGCTGGTAGCCTTTA 42717 ||||| ||| ||| |||| | | | | | | ||| | ||| | || || Sbjct 10144 ACTCAAGTGGTGCGA----CCCGCGTGTATCCTCCTACCCGGAGCGCCTGCTGGCTTTCG 10089 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 | || || || |||||||||||||||||| | ||| ||||||||| ||||| ||| || Sbjct 10088 CTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCTGCTCCATCTTTTGGCTAAAGAAGC 10029 Query 42778 A-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 || || |||||||| || | |||||||||||| |||||||| | |||||||| || Sbjct 10028 GCGGCCTC-ATGCCCGGTCTGAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATG 9970 Query 42837 CATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAG 42896 || | |||||| |||||||| ||| ||| | | ||| ||||| || || Sbjct 9969 CACACGGACTTCGCCTGCCTTTTGTACTCCAAGCTGGTCA---CCAAGCTGCCGGAGAGC 9913 Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCG 42956 || || | | ||||| || || |||| ||| ||| | ||||| | | ||| Sbjct 9912 CGTGTACACGAGATCATTCGTGACGCTGTGGTGATTGAGCACGAGTTTGTGCGTGACTCG 9853 Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016 || || ||| ||| | || |||||| | |||||||||| ||||||| ||| ||| Sbjct 9852 CTCCCTGTGGAGCTGATTGGTATGAACTCTGCCCTCATGTGCCAGTACATTGAGTTCGTG 9793 Query 43017 GCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTC 43076 || |||| ||| || | | | | ||| | | ||||| || | | ||| || Sbjct 9792 GCTGACCGTCTGCTCTACTCGCTTGGTGTGTCCAAGATCTACCACGCTAAGAACCCTTTT 9733 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 |||| ||||| | ||||| | | |||||||||||||||||||||||||| || | | Sbjct 9732 GACTGGATGGACATGATCTCTCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGC 9673 Query 43137 GACTAC 43142 || ||| Sbjct 9672 GAGTAC 9667 >seq2358 Length=23655 Score = 248 bits (274), Expect = 2e-60 Identities = 910/1408 (65%), Gaps = 48/1408 (3%) Strand=Plus/Minus Query 244070 AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGG 244129 ||| ||| | ||| | | |||| || | | ||||| || | || ||| || || | | Sbjct 14969 AGCTCCTTCATCAGATACTTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTG 14910 Query 244130 TAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTC 244189 || | |||| || |||||||| ||| |||||||||| ||||| |||||| Sbjct 14909 TACATGTTGGACGTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAG 14850 Query 244190 GCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGT 244249 || ||||||||||| | |||||||| ||| | | ||||| | || | | Sbjct 14849 GCTGTCGGCATGGGTGCAACCAGCAGCGAGTTACGGAGACCGTGTTTAATGACGTCATCT 14790 Query 244250 CTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCA 244309 | || || ||||| ||| | |||| ||| | || ||| |||||||||||| Sbjct 14789 TTTAGTGCGGCCCAGTTCCAAA-GCCC-AGATGAAG----GTGTGACGCCCCACATGTCG 14736 Query 244310 AACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGC 244369 ||||| | | ||||| ||| | || ||||| | | ||| ||| ||||| | Sbjct 14735 AACTGGAAGATACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCC 14676 Query 244370 TGGGCCAGCTTACAGCT-CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTT 244428 ||| | || || | | || | ||| || ||||||| ||||||||||| |||| Sbjct 14675 GTGGCAATCTC-CATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTT 14617 Query 244429 GTTCATGTCGCGGGCCTTGCCGCAGGT-GAAGGGGATGCCCATCATCATGAAGACGTCGG 244487 ||||| || || || |||| | | ||| | | | ||| | ||||| | || | Sbjct 14616 GTTCAATTCACGAGC-TTGCGGGCTCTCGAACGCGTAGTTCATGAGGATGAACGCATCCG 14558 Query 244488 CCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATG---GCTT 244544 |||| ||||| ||||| || || ||||| | || ||| ||||||| | || || | Sbjct 14557 CCAGACCCTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGA---CTTGCGAGCCT 14501 Query 244545 CGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGA 244604 | | || || ||| ||||| ||||||| ||||||||||||||||| ||||||| || Sbjct 14500 CTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGA 14441 Query 244605 CGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCA 244664 | || || ||| || ||||| || | || || ||| | Sbjct 14440 CCACCTCATACAGTCTCTTGTAGTCGAACACA-------CC---------GTTTTCC--A 14399 Query 244665 CAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGT 244724 ||||| || || || |||| |||||| || |||||||| || | |||| Sbjct 14398 CAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGT 14339 Query 244725 ACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGG 244784 ||| | | ||| ||| | ||| ||| | ||| || |||| || ||| || || | Sbjct 14338 ACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGGTTCG 14279 Query 244785 ACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGA 244844 ||||| ||| |||||||||||||||||||||||| | || ||||| | ||| ||| Sbjct 14278 ACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGT 14219 Query 244845 CGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCT 244904 | |||| | ||| || | | ||| |||| ||| | || || || || || Sbjct 14218 CTAGGATAGCGAACCACAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCT 14159 Query 244905 CGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACG 244964 |||| ||||| || || ||||| ||||||| ||||| || || || | Sbjct 14158 CGTACTTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACC-AGGAGCT 14100 Query 244965 ACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCG 245023 || ||| || | | |||||||| ||| | ||| || |||| ||||||||| || Sbjct 14099 TCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCA 14040 Query 245024 GGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTC 245083 || | ||| || || | || | ||| | || | ||| || || |||||| Sbjct 14039 GGCACCCACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCTTA 13980 Query 245084 CTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCG 245143 | ||| |||| || || || |||||| ||||||| ||||||| ||||| ||||| | | Sbjct 13979 CGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAG 13920 Query 245144 CCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCG 245199 || ||||| || |||||||||| | | ||||| |||| || | || Sbjct 13919 CCCTTGCGCTTACCTCCGCCCTGGTCCA----CATAGCGAGCCGTGTCGTTAAACACACG 13864 Query 245200 CAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCC 245259 || | || | |||||||||||| |||||| ||||| ||||||| | || | Sbjct 13863 CAACATGGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGC 13804 Query 245260 CCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCT 245319 | || |||| || || || | ||||| || || ||||| |||||| Sbjct 13803 GCGGATGTTGTGCATACTGATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTG 13744 Query 245320 CTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGA 245379 ||| | |||||| |||||||| || ||| || ||| | || ||||| || Sbjct 13743 CTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGA 13684 Query 245380 GGACAGCTG-GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGT 245438 |||| ||| || | ||| | ||| | |||||| ||||| ||| ||||||| || ||| Sbjct 13683 AGACAACTGAGGACGTGGCG-TGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAG- 13626 Query 245439 AGCGGCT-CGAGAGGAACCCGTACGTCT 245465 | | || ||| | || | ||||||||| Sbjct 13625 AACTTCTGCGACATGAGCTCGTACGTCT 13598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944266698357920