Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq343 147 2e-30 >seq343 Length=80906 Score = 147 bits (162), Expect = 2e-30 Identities = 456/701 (65%), Gaps = 25/701 (4%) Strand=Plus/Minus Query 20134 CGGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTA 20193 ||| || |||||||| ||||| || |||||| | | || || || | ||| | ||| Sbjct 74077 CGGGAACGGACGTGGTGTGCGTGTAAGCTGCTTCTGAAGGGGTTCCACATGGTTCAGGTA 74018 Query 20194 GATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGC 20253 | ||| || || || | ||| || ||||| || ||| | || || || || || || Sbjct 74017 CACGTGTGCGTCGCCGATAACGTGGATGAACTCGCCAGGTTTTAGTCCCGTCACTTGTGC 73958 Query 20254 AAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTC 20313 || || || | || | |||||||||||||| ||||| ||||| | ||||||||| Sbjct 73957 AACCAGTCGTGTCAGCAGCGCGTAGCTGGCAATGTTGAAAGGCACTCCAAGACCCATGTC 73898 Query 20314 TCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAA 20373 |||| | ||| |||| |||||| || | || |||| || || || || || || || Sbjct 73897 GGCCGATCGCTGGTACATCTGACACGATAATTCCCCGTTGGCAACGTAGAACTGGCAGAA 73838 Query 20374 CAAGTGACAGGGCGGAAGCGCCATCAACGACAAG-TCCGCCGGGTTCCACGCACACATAA 20432 || ||| || ||||| || |||||| || || || |||||||||||||| ||| | Sbjct 73837 CATGTGGCAAGGCGGCAGGGCCATCT-CGTTGAGATCGGCCGGGTTCCACGCCGACAGCA 73779 Query 20433 TGATTCTTCTATCGTGCGGATTATT----TTTTATTAAATCCACAATGTACGACAATTGG 20488 || | || || ||||| | | | |||| | | | | ||| Sbjct 73778 CAATCCGTCGGTCAGTAGGATTCGTACGCAGCTTGTGAATC----ACCTCTGCTAGCTGG 73723 Query 20489 TCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTC 20548 || | || ||||| || ||||| |||| | |||| |||| || |||||||| | | Sbjct 73722 TCCACACCTTGGCCAGTGTAGTCTGCATGCATGTCCGTGTACTTGGCACCAAAGTGACGC 73663 Query 20549 CACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCG 20608 |||||||| |||||||| ||||| | || || || | | | ||| || || | Sbjct 73662 CACTGGAAGCCGTAAACCGGTCCAAGGTCTCCAACCTCCCGATCCTGCAGTCCTCGGCTA 73603 Query 20609 GCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCTTGAAAGCTCC 20668 |||| |||| | || ||||| |||||| || ||| | |||| ||| | Sbjct 73602 TCCAGATACTCGCGCGATCCATTGCCGTCCCAAAT-ATGAATATCTTTCT-----GCTGC 73549 Query 20669 CTGGAGTCAGTACT------CCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGC 20722 | || | ||| || | | |||||| || ||||| | |||| |||||| Sbjct 73548 AGAGTGTGGGCACTTGTGTCTCCACTAATAAACCACAGTAGCTCCTCGGCTACACCTCGC 73489 Query 20723 CAAAACACCCGCTTTGTGGTTAGTAAGGGAAAG---TGGTCCCGCAGACTATACCTGGCC 20779 || |||||||| || || || || || |||||| | || | |||||| |||| | Sbjct 73488 CAGAACACCCGTTTGGTCGTCAGCAATGGAAAGACATTGTTCTTCAGACTGAACCTCATC 73429 Query 20780 TGCATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTC 20820 ||| ||||| | || | ||||| | || || ||||| Sbjct 73428 TGCGCTCCAAAGACCGACAACGTGCCCGTTCCAGTACGGTC 73388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441338913603280