Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq759 123 6e-23 seq1672 122 2e-22 seq4505 120 7e-22 seq4565 116 9e-21 seq1517 114 3e-20 seq2652 113 1e-19 >seq759 Length=119387 Score = 123 bits (136), Expect = 6e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| |||||||| ||||| || | || || || |||||| Sbjct 32594 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 32653 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTT 288401 |||| |||||| || | ||||| ||||| || |||||||| ||| |||| ||||| Sbjct 32654 ATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTG-ACGTT 32712 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || || || | || || || |||||||||||||| ||||||| ||||| || Sbjct 32713 GTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCAC 32772 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 32773 GAAGATCTGCAT 32784 Score = 120 bits (132), Expect = 7e-22 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| |||||||| ||||| || | || || || |||||| Sbjct 32366 TCCTTCTGGATGTTGTAGTCNCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 32425 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTT 288401 |||| |||||| || | ||||| ||||| || |||||||| ||| |||| ||||| Sbjct 32426 ATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTG-ACGTT 32484 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || || || | || || || |||||||||||||| ||||||| ||||| || Sbjct 32485 GTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCAC 32544 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 32545 GAAGATCTGCAT 32556 Score = 118 bits (130), Expect = 3e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| |||||||| ||||| || | || || || |||||| Sbjct 32138 TCCTTCTGGATGTTGTAGTCACTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 32197 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTT 288401 |||| |||||| || | ||||| ||||| || |||||||| ||| |||| ||||| Sbjct 32198 ATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTG-ACGTT 32256 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || || || | || || || |||||||||||||| ||||||| ||||| || Sbjct 32257 GTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCAC 32316 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 32317 GAAGATCTGCAT 32328 Score = 118 bits (130), Expect = 3e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| |||||||| ||||| || | || || || |||||| Sbjct 32822 TCCTTCTGGATGTTGTAGTCACTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 32881 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTT 288401 |||| |||||| || | ||||| ||||| || |||||||| ||| |||| ||||| Sbjct 32882 ATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTG-ACGTT 32940 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || || || | || || || |||||||||||||| ||||||| ||||| || Sbjct 32941 GTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCAC 33000 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 33001 GAAGATCTGCAT 33012 >seq1672 Length=23672 Score = 122 bits (134), Expect = 2e-22 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || || |||| || || || ||||| || |||| Sbjct 22322 CATG-CCACCACGCAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGT 22380 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || || ||||| ||||| || | || || || ||||||||||||||||| || | Sbjct 22381 CGCTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAG 22440 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || ||||| || ||||| || ||| |||||||| || || || || | | Sbjct 22441 GCGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCT 22500 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||||||||||||| ||||||| ||||| ||||| |||||||| Sbjct 22501 CCACGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 22552 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || || |||| || || || ||||| || || ||| Sbjct 22098 CCACCGCGAAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 22157 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || ||||||||||||||||| || | || Sbjct 22158 AGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGA 22217 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||| || ||| |||||||| || || || || || || || Sbjct 22218 ATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 22277 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| ||||||| ||||| ||||| |||||||| Sbjct 22278 TCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 22324 Score = 113 bits (124), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || || |||| || || || ||||| || || | Sbjct 23006 CATG-CCACCACGCAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAAT 23064 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || || ||||| ||||| || | || || || ||||||||||||||||| || | Sbjct 23065 CGCTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAG 23124 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || ||||| || ||||| || ||| |||||||| || || || || || | Sbjct 23125 GCGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCT 23184 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||| || || ||||| ||||||| ||||| ||||| |||||||| Sbjct 23185 CCACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 23236 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| || ||||| ||||| || | || || || |||||| Sbjct 22590 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAG 22649 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | || || ||||| || ||||| || ||| || ||||| Sbjct 22650 ATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTG 22709 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || || || || ||||| || || ||||| ||||||| ||||| ||| Sbjct 22710 TCGATCGAGTCCGACGGCTCCACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACG 22769 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 22770 AAGATCTGCAT 22780 >seq4505 Length=81093 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | ||||||||| ||||| || | || || || ||||||||| Sbjct 71259 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 71200 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 |||||||| || | |||||||| || || |||||||||||| || || || || Sbjct 71199 AGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 71140 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || || || || || ||||||||||| ||||| || |||| ||||| || || Sbjct 71139 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAG 71080 Query 288466 ATCTGCATTAT 288476 |||||||| || Sbjct 71079 ATCTGCATGAT 71069 >seq4565 Length=138104 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| ||||| || | || || || |||||| Sbjct 118025 TCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 118084 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | |||||||| || || ||||| |||||| || || || Sbjct 118085 ATCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTG 118144 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || || || ||||||||||| ||||| || || || ||||||||| Sbjct 118145 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACG 118204 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 118205 AAAATCTGCATT 118216 >seq1517 Length=75306 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | ||||||||| ||||| || | || || || ||||||||| Sbjct 72491 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 72432 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || | |||||||| || || |||||||||||| || || || || Sbjct 72431 AGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 72372 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || || || || || ||||||||||| ||||| || |||| ||||| || || Sbjct 72371 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAG 72312 Query 288466 ATCTGCATTAT 288476 |||||||| || Sbjct 72311 ATCTGCATGAT 72301 >seq2652 Length=38300 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || || |||| || || || ||||| || || ||| Sbjct 33050 CCACCGCGAAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 33109 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || ||||||||||||||||| || | || Sbjct 33110 AGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGA 33169 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||| || ||| |||||||| || | || || || || || Sbjct 33170 ATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGNTCGAGTCCGACGGCTCCACG 33229 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| ||||||| ||||| ||||| |||||||| Sbjct 33230 TCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 33276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179561567834276