Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq5644 122 2e-22 >seq5644 Length=66598 Score = 122 bits (134), Expect = 2e-22 Identities = 443/686 (65%), Gaps = 13/686 (2%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| ||||| || ||||||| ||||| |||||||||| ||| ||||| Sbjct 23028 CTCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCATCAAG 23087 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||| |||||||||||||| ||||| || ||||| || | |||||| || || Sbjct 23088 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCGACGTAGGCGAAACGCATGGAAGGGTG 23147 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || || |||| | |||| || ||||| |||| ||| || || || Sbjct 23148 CTTCCACACCTGACCACTGGTCGGCTCCACTTCACCCGTCAGCATCTTGATCAGCGTAGA 23207 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCG-ATACCTGGGCAT 333552 || || ||||| || || | |||| | || | | || | | || | || Sbjct 23208 CTTACCGGCACCGTTGGGTCCCAGCACAGCGATACGGCTCGAAAGAGCACACGTCA-CAG 23266 Query 333553 TCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-AGC 333611 | ||||| | | || | |||||| |||| | || ||| || || Sbjct 23267 AGATGTTGTTGATCGACGGCTTGGGGGCACCCGGGTACTGGTACGA-ACAGTTGGTCAGA 23325 Query 333612 TTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTC 333671 ||||||| |||| |||| | | ||||| || ||||||||||| | Sbjct 23326 CGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCAGGCTCGGGGAAGATG 23385 Query 333672 CACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTC 333728 || | | ||| || |||| || ||||||| | | || || || || | Sbjct 23386 AACTTGACGTTCTCCGACTCG---AGCTCGTAGTAGGCCTTGGCCTCAGGCTTCTGCTCC 23442 Query 333729 ACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATA 333788 ||||||| ||| || || |||||||| |||||||||| || | ||||| || || Sbjct 23443 ACGAACTTGGAGAGGTTACCCTTGTAGATCTTCAGCTTACGG---GTCTCGTAGTGAATG 23499 Query 333789 ATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACG 333848 || ||| || || ||||||||| || |||||||| ||||| || | | | | ||| Sbjct 23500 ATGTTGGTACACACGTTGTCGAGGAAGCCAGAGTCGTGCGACACCATGATGGAAGTCACG 23559 Query 333849 TCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTG 333908 | | ||| | ||||||| | |||||| ||||| ||| | ||||| Sbjct 23560 TTCGGCAGGCTCGTCAGGTAGTTCTCCAGCCAGGCAACGTTCTTGACATCCAAGTGGTTC 23619 Query 333909 GTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGT 333968 || ||||| |||||||| || | | || ||| | | ||| ||||| || || | ||| Sbjct 23620 GTGGGCTCATCAAGAAGCAGGATGTCGGCCTTCTGCAACATGGCACGAGCCAGCTCCAGT 23679 Query 333969 TTCATTTTCCACCCTCCTGAAAGAGT 333994 ||||| ||||| || || ||||| || Sbjct 23680 TTCATCTTCCAACCACCCGAAAGGGT 23705 Score = 91.5 bits (100), Expect = 3e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || |||||||| ||||| || || |||||||| || || ||||| || Sbjct 23886 GGGGAATCCCTCAAGCTGGCCGTTGGAGATGGCACGCATCAGGGTCGACTTACCACAACC 23945 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || || ||||||||||| |||| |||||||| || | || | |||||||| Sbjct 23946 GTTGGGACCGCACAGACCGTAACGGTGACCACGCTTAAGGCGAAGACGAGCGTTGTTCAG 24005 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATC 334348 ||||| | ||||| || || || || || || || | ||||| || Sbjct 24006 CAGAATCATACCACCGTAAGCAAGCGAGAACTCGCAGTTGCACAGGTC 24053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102793209547700