Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq4620 111 8e-20 seq1636 111 8e-20 >seq4620 Length=73557 Score = 111 bits (122), Expect = 8e-20 Identities = 330/503 (66%), Gaps = 21/503 (4%) Strand=Plus/Minus Query 66066 GCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGAT 66125 |||| || || || || || || ||||| | | |||||| ||| || || |||||| Sbjct 10839 GCCTTTATTGATGCAGAGCACGCTATCGACGCCCACTACGCCAAGGCTCTGGGAGTGGAT 10780 Query 66126 GTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66185 | ||| ||| || |||||||||| |||| || | || |||||||||| ||| Sbjct 10779 ATTGACGCCCTCTACGTCTCGCAGCCAGACTCTGGAGAAGAAGCTCTGGAGATCGCAGAC 10720 Query 66186 CTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTG 66245 ||| || || || | || | | | || |||| |||||| || |||||| Sbjct 10719 ACGCTCATCCGATCGGGTGCTGTAGACCTTGTGGTGCTGGATAGTGTGGCAGCTCTGGTG 10660 Query 66246 CCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTG 66305 || || || ||||| || || || || || ||| ||| | | || || || || || Sbjct 10659 CCTCGTGCCGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCTCTACAAGCGCGTCTT 10600 Query 66306 ATGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGCACCAA---CACGCTCACC 66362 ||| ||||| || | ||||||||||| | | ||| |||| ||| | | | Sbjct 10599 ATGAGCCAGGCACTGAGAAAGCTGACCGGGTCACTGTCCAAGTCCAATTGCACCATTATC 10540 Query 66363 CTGTGGGTGAATCAGCTGCGCGAGAAGATCGG---CAACGTGGGCTACGGCCCGAATGAG 66419 | | || ||| | || |||| | || || | | || | | ||||| | | Sbjct 10539 TTCC---TCAACCAGATCCGTCAGAAAGTAGGTATCATCTTTGGATCC--CCCGAG-GTG 10486 Query 66420 ACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAG- 66478 || | ||||||| ||| |||||| |||||| |||||||| ||||| ||||| | Sbjct 10485 ACGTCA---GGTGGTACGGCATTGCGCTACTACGCGTCGGTGCGGCTGGATATCCGCCGT 10429 Query 66479 --GATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTT 66536 || |||| | ||||||||||| ||| |||||||||| ||| || ||||| Sbjct 10428 AAGACAGCCATC---AAGGAAGGCGACCAGGTTGTCGGCAACGAGACGGTGGTCAAGGTG 10372 Query 66537 GTCAAGAACAAGCTGGCGCCTCC 66559 | |||||||||| |||| |||| Sbjct 10371 GCCAAGAACAAGTTGGCTTCTCC 10349 >seq1636 Length=46757 Score = 111 bits (122), Expect = 8e-20 Identities = 330/503 (66%), Gaps = 21/503 (4%) Strand=Plus/Minus Query 66066 GCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGAT 66125 |||| || || || || || || ||||| | | |||||| ||| || || |||||| Sbjct 19469 GCCTTTATTGATGCAGAGCACGCTATCGACGCCCACTACGCCAAGGCTCTGGGAGTGGAT 19410 Query 66126 GTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66185 | ||| ||| || |||||||||| |||| || | || |||||||||| ||| Sbjct 19409 ATTGACGCCCTCTACGTCTCGCAGCCAGACTCTGGAGAAGAAGCTCTGGAGATCGCAGAC 19350 Query 66186 CTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTG 66245 ||| || || || | || | | | || |||| |||||| || |||||| Sbjct 19349 ACGCTCATCCGATCGGGTGCTGTAGACCTTGTGGTGCTGGATAGTGTGGCAGCTCTGGTG 19290 Query 66246 CCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTG 66305 || || || ||||| || || || || || ||| ||| | | || || || || || Sbjct 19289 CCTCGTGCCGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCTCTACAAGCGCGTCTT 19230 Query 66306 ATGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGCACCAA---CACGCTCACC 66362 ||| ||||| || | ||||||||||| | | ||| |||| ||| | | | Sbjct 19229 ATGAGCCAGGCACTGAGAAAGCTGACCGGGTCACTGTCCAAGTCCAATTGCACCATTATC 19170 Query 66363 CTGTGGGTGAATCAGCTGCGCGAGAAGATCGG---CAACGTGGGCTACGGCCCGAATGAG 66419 | | || ||| | || |||| | || || | | || | | ||||| | | Sbjct 19169 TTCC---TCAACCAGATCCGTCAGAAAGTAGGTATCATCTTTGGATCC--CCCGAG-GTG 19116 Query 66420 ACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAG- 66478 || | ||||||| ||| |||||| |||||| |||||||| ||||| ||||| | Sbjct 19115 ACGTCA---GGTGGTACGGCATTGCGCTACTACGCGTCGGTGCGGCTGGATATCCGCCGT 19059 Query 66479 --GATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTT 66536 || |||| | ||||||||||| ||| |||||||||| ||| || ||||| Sbjct 19058 AAGACAGCCATC---AAGGAAGGCGACCAGGTTGTCGGCAACGAGACGGTGGTCAAGGTG 19002 Query 66537 GTCAAGAACAAGCTGGCGCCTCC 66559 | |||||||||| |||| |||| Sbjct 19001 GCCAAGAACAAGTTGGCTTCTCC 18979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242452249726664