Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2358 302 4e-77 >seq2358 Length=23655 Score = 302 bits (334), Expect = 4e-77 Identities = 884/1351 (65%), Gaps = 53/1351 (4%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 |||||||| || || |||||||| || || || || ||| ||||||| || ||||| Sbjct 13636 GCCACCCCTACTCTCTTCAACGCCGGCACGCCACGTCCTCAGTTGTCTTCTTGCTTCCTA 13695 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| ||||| || || |||| ||||| ||| ||| | || || Sbjct 13696 TTGGCTATGCAGGATGACTCTATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGT 13755 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| |||| ||||| || ||||| |||||| | ||| || | || |||| | Sbjct 13756 ATCTCTAAATGGGCGGGCGGTATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGC 13815 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||| || || ||| |||| |||||| | |||| ||| | || || || ||| Sbjct 13816 TACATCCGCGGCACGAACGGCTCCTCTAACGGCATTATCCCCATGTTGCGTGTGTTTAAC 13875 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || |||| ||||| ||||||||||| || || | | | ||||| || ||||| |||| Sbjct 13876 GACACGGCTCGCTATGTGGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTAC 13935 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | ||||| |||||||| |||||| | ||| | || ||||| ||||||||||| || Sbjct 13936 TTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAAT 13995 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || ||| | | ||| | ||| | || ||||| || |||||||| || || || ||||| Sbjct 13996 GAGCTGCACCGCGCCCGCGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAG 14055 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | || ||| || | |||||| | || |||||||| ||| ||| || |||| | Sbjct 14056 AGAGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCTGGTCTGTAC 14115 Query 94372 GACGTTTGTG--GATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGG 94429 || || | ||| | | ||||||| |||||| ||||| | | || | Sbjct 14116 GAGTGCTGGGGCGAT-GAG-TTTGAAGCTCTGTATGAAAAGTACGAGAAGGAAGGACGTG 14173 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 | | ||| || | ||| | |||||||| ||| | |||| ||| | |||| Sbjct 14174 CGCGTAAGACAATCAACGCTCAGCAGCTGTGGTTCGCTATCCTAGACGCTCAGATTGAGA 14233 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 |||| ||||| ||| | | ||||||| | | ||| |||||| ||||||||| || Sbjct 14234 CGGGAGTGCCCTTCATGCTCTACAAGGACGCAGCTAACCGCAAGTCGAACCAGCAGAACT 14293 Query 94550 TCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACG 94609 | || |||| | || | ||| ||| | | ||||| || || || || | Sbjct 14294 TGGGTACGATCCGTTCCAGCAACTTATGCTGCGAAGTCATGGAGTACACGTCACCCGATG 14353 Query 94610 AGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACA 94669 || | || ||||| ||| ||| || | ||| | | || ||| || | || Sbjct 14354 AGGTGGCAGTGTGCAACTTGGCGTCTGTGGCGCTGCCTATGTTTGTG-GAAA-----AC- 14406 Query 94670 CGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTG- 94728 | | |||||| || | ||| ||| | | || | | || || | Sbjct 14407 --------GGTGTGTTCGA-CTACAAGAGACTGT--ATGAGGTGGTCAAGGTGATCACGC 14455 Query 94729 --AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAA 94786 ||||| |||| ||| |||||| |||| || || || | ||||| || || | Sbjct 14456 GCAACCTCAACAAGGTCATCGACGTCAACTATTATCCTGTTGCAGAGGCTCGCAAGTCCA 14515 Query 94787 ACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGA 94846 || || ||||| ||||| || || |||||||||||| | ||||| ||| | | | | Sbjct 14516 ACATGCGCCATCGTCCCATTGGTATTGGCGTCCAGGGTCTGGCGGATGCGTTCATCCTCA 14575 Query 94847 TGCGTCTGCCCTACGACTCTGTCGA-----CGC-GGCGGGT---TTGAATTTGAACATAT 94897 || || || | |||| ||| || || ||||| |||||| | Sbjct 14576 TG---------AACTACGCGTTCGAGAGCCCGCAAGCTCGTGAATTGAACAAGAACATCT 14626 Query 94898 TCGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCG 94957 |||| | || || | | |||||| | || | | | |||| |||| | Sbjct 14627 TCGAGACGATCTACTTTGCTGCCATGGAGACGTCGATGGAGATTGCCA---CGGAATTGG 14683 Query 94958 GGCCACACGAATCGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGACCT 95015 | || |||| |||||| || || || | | | |||| || || ||||||||| | Sbjct 14684 GTCCTTACGAGACGTTCCAGGGCTCTCCGGCCAGTA--AGGGTATCTTCCAGTTCGACAT 14741 Query 95016 CTGGGGTGTGAAGC---CCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTAT 95072 ||||| || | | | || || || | |||||| || ||| | ||| || || Sbjct 14742 GTGGGGCGTCACACCTTCATCTGGGCTTTGGAACTGGGCCGCACTAAAAGATGACGTCAT 14801 Query 95073 CAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCA 95132 ||||||||| | ||| ||||||| || || |||||||| || ||||||||||| || Sbjct 14802 TAAACACGGTCTCCGTAACTCGCTGCTGGTTGCACCCATGCCGACAGCCTCCACGGCTCA 14861 Query 95133 GATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGT 95192 |||||| |||||||||||||| |||| || | ||| |||||| |||||||| | || || Sbjct 14862 GATCCTGGGCAACAACGAGTCTATCGAGCCTTACACGTCCAACATGTACAACCGTCGTGT 14921 Query 95193 GCTCGCCGGGGAATTCCCCGTCATCAACAAG 95223 | | || || || ||| | || | |||||| Sbjct 14922 GTTGGCTGGTGAGTTCACGATCGTTAACAAG 14952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494685217626320