Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5877 134 1e-26 seq4565 116 4e-21 seq1672 109 5e-19 seq759 107 2e-18 seq4505 100 3e-16 seq1517 96.9 3e-15 >seq5877 Length=64605 Score = 134 bits (148), Expect = 1e-26 Identities = 492/759 (65%), Gaps = 31/759 (4%) Strand=Plus/Minus Query 52093 ACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGA 52152 ||||||| | || |||||||||||| | || |||||||| ||| || | ||||||| Sbjct 10409 ACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGTGACGGTATCGTGA 10350 Query 52153 ACATTAACCT---CATCGAGTACATGCAGCGGAACGTTCCGGAACTCGAGGCGCAATACT 52209 || ||| | ||| | | || ||| || | || | || | |||||| | | || Sbjct 10349 ACGAGAACTTGGCCATGAACTTCA-GCAACGAA--GTGCAGGTGCCCGAGGCTCGTTGCT 10293 Query 52210 TTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTG 52269 | ||| || || | ||| ||| | | ||| ||||| | ||| |||||||||| Sbjct 10292 TCTATGGCTTCCAGATCGCCATTGAGAACATTCACTCGGAGGTCTACTCACTGCTCATTG 10233 Query 52270 AGCAGCTGATAAAAGATGAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACGTGC 52329 | | || || || | | |||| ||| || ||| ||| | ||| | | | Sbjct 10232 ACACGTACATCAAGGACGCGATCGAGAAGGACCATCTCCTGCGTGCCATTGAGACCATCC 10173 Query 52330 CGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGA---GAGCGACACCGCCA 52386 | || || || |||||||| |||||| | |||||| ||| | | | || || Sbjct 10172 CTTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGCGTGTATCCTCCT 10113 Query 52387 CGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCT 52446 | || ||||| || |||| ||||| || || ||| | || || || ||| | Sbjct 10112 ACCCGG---AGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTT 10056 Query 52447 TTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACG 52506 | | ||||||||| | || | | ||| | |||||||| |||| ||| |||| Sbjct 10055 TCTGCTCCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACG 9996 Query 52507 AGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGC 52566 || | || || ||||| || ||||||||||||| || ||||| | ||| | || Sbjct 9995 AGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCCTGCCTTTTGTACTCCAAGC 9936 Query 52567 GCGTGACCGAAAAATTG-----GATTCGG--ACACGATCCTGAGCATGTTCAAGGAGGCG 52619 || ||| || || || || |||||| || ||| || | | || Sbjct 9935 TGGTCACC---AAGCTGCCGGAGAGCCGTGTACACGA----GATCAT--TCGTG-ACGCT 9886 Query 52620 GTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC 52679 |||| || || | |||||| | | | |||| || || |||||| | || |||||| Sbjct 9885 GTGGTGATTGAGCACGAGTTTGTGCGTGACTCGCTCCCTGTGGAGCTGATTGGTATGAAC 9826 Query 52680 GC-GCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG 52738 | || || |||||| ||||||| ||||| ||||| || |||||| | ||| || Sbjct 9825 TCTGCCCTC-ATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTCTACTCGCTTGG 9767 Query 52739 GCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGA 52798 | | ||| || | ||||| || || ||||| | ||| ||| || || || | Sbjct 9766 TGTGTCCAAGATCTACCACGCTAAGAACCCTTTTGACTGGATGGACATGATCTCTCTCCA 9707 Query 52799 GGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||||||||||||||||| || |||||||| Sbjct 9706 AGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTA 9668 >seq4565 Length=138104 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || | || | | | |||||||| || ||||||||||| | Sbjct 117989 CCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 118048 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||| || || |||| |||| |||||||| ||||| || || Sbjct 118049 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 118108 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||||| || || | |||| || | | |||| | || |||||| Sbjct 118109 ATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTG-TCAATGCTGTCCGACGGCTCCAC 118167 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | || || || || || || || || ||||||||||| Sbjct 118168 GTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 118215 >seq1672 Length=23672 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 |||||||||| ||||| || | || | | |||||||| || ||||||||||||||| Sbjct 22554 CCGCCTCGCAGACGCAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 22613 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || || || | |||| |||||||| ||||| || || Sbjct 22614 AGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGA 22673 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| || || || || | | || | | ||| | || |||||| Sbjct 22674 ATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 22733 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| || | || || || |||| || || || || ||||||||| Sbjct 22734 TCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCATG 22781 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | | |||||||| || |||||||||||||| Sbjct 22325 GCCACCACGCAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 22384 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||||||| || || || | |||| |||||||| ||||| || || Sbjct 22385 CAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 22444 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| || || || || | | || | | ||| | | |||||| Sbjct 22445 AATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCAC 22504 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||| || || |||| || || || || |||||||| Sbjct 22505 GTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 22552 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | | |||||||| || |||||||||||||| Sbjct 22781 GCCACCACGCAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 22840 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||| || || || || | |||| | |||||| ||||| || || Sbjct 22841 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGG 22900 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| ||||| || | | || | | ||| | | |||||| Sbjct 22901 GATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGANGGCTCCAC 22960 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || || |||| || || || || ||||||||| Sbjct 22961 GTCNAGNGTNATNGTCTTGCCGGTCAANGTCTTCACGAAGATCTGCATG 23009 >seq759 Length=119387 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 |||||||||| ||||| || | || | | |||||||| || ||||||||||||||| Sbjct 32558 CCGCCTCGCAGACGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 32617 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || || | |||| | |||||| ||||| || || Sbjct 32618 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 32677 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| ||||| || | | || | | ||| | | |||||| Sbjct 32678 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 32737 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||| || || |||| || || || || |||||||| Sbjct 32738 TCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 32784 Score = 105 bits (116), Expect = 7e-18 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 |||||||||| ||||| || | || | | |||||||| || ||||||||||| ||| Sbjct 32330 CCGCCTCGCAGACGCAGCACCAGGTGGAGNGTAGACTCCTTCTGGATGTTGTAGTCNCTC 32389 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || || | |||| | |||||| ||||| || || Sbjct 32390 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 32449 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| ||||| || | | || | | ||| | | |||||| Sbjct 32450 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 32509 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||| || || |||| || || || || |||||||| Sbjct 32510 TCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 32556 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 |||||||||| ||||| || | || | | |||||||| || ||||||||||| ||| Sbjct 32786 CCGCCTCGCAGACGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCACTC 32845 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || || | |||| | |||||| ||||| || || Sbjct 32846 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 32905 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| ||||| || | | || | | ||| | | |||||| Sbjct 32906 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 32965 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||| || || |||| || || || || |||||||| Sbjct 32966 TCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 33012 Score = 100 bits (110), Expect = 3e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| ||||| || | || | | |||||||| || ||||||||||| ||| Sbjct 32102 CCGCCACGCAGACGCAGCACCAGGTGGAGNGTAGACTCCTTCTGGATGTTGTAGTCACTC 32161 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || || | |||| | |||||| ||||| || || Sbjct 32162 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 32221 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| ||||| || | | || | | ||| | | |||||| Sbjct 32222 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 32281 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||| || || |||| || || || || |||||||| Sbjct 32282 TCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 32328 >seq4505 Length=81093 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| | || || ||||||||| || || |||| ||| Sbjct 71261 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 71202 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | |||||||| ||||| || || || || || ||||| |||||| || || | |||| Sbjct 71201 TCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTG- 71143 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | | |||| | || |||||| |||| ||| | || || || |||| || || ||| Sbjct 71142 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 71083 Query 138604 AAAATCTGCATG 138615 || ||||||||| Sbjct 71082 AAGATCTGCATG 71071 >seq1517 Length=75306 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| | || || ||||||||| || || |||| ||| Sbjct 72493 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 72434 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || ||||| ||||| || || || || || ||||| |||||| || || | |||| Sbjct 72433 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTG- 72375 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | | |||| | || |||||| |||| ||| | || || || |||| || || ||| Sbjct 72374 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 72315 Query 138604 AAAATCTGCATG 138615 || ||||||||| Sbjct 72314 AAGATCTGCATG 72303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496224299454240