Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1672 89.7 4e-13 seq2652 84.2 2e-11 >seq1672 Length=23672 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | || | ||||| ||||| || || || ||||||||||||| Sbjct 23008 TGCCACCACGCAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGC 23067 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || | | |||| || | || ||||||||| | |||| |||||| ||||| | Sbjct 23068 TCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCG 23127 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| ||| || || || | || || | || || | Sbjct 23128 GAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCA 23187 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 |||| | ||||||||| || || |||| || || || || || ||||| || Sbjct 23188 CGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCATCTT 23239 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| ||||| || || || |||||||||||||| || | | |||| || | || Sbjct 22122 TGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCGAGCTGC 22181 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||||||| | |||| |||||| ||||| ||||| ||||||||||| ||| || Sbjct 22182 TTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTTC 22241 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || | || || ||||| | ||||||||| || || ||| Sbjct 22242 TGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGGGTAATGGTCTTGCCGGTC 22301 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | || || || || || ||||| Sbjct 22302 AACGTCTTCACGAAGATCTGCAT 22324 >seq2652 Length=38300 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| ||||| || || || |||||||||||||| || | | |||| || | || Sbjct 33074 TGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCGAGCTGC 33133 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||||||| | |||| |||||| ||||| ||||| ||||||||||| ||| || Sbjct 33134 TTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTTC 33193 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || | | || || ||||| | ||||||||| || || ||| Sbjct 33194 TGCTTCACGTTGTCGNTCGAGTCCGACGGCTCCACGTCGAGGGTAATGGTCTTGCCGGTC 33253 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 | || || || || || ||||| || Sbjct 33254 AACGTCTTCACGAAGATCTGCATCTT 33279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357365247198470